Skip to content

eldonb/Durrett_Schweinsberg_Expected_SFS

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

8 Commits
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Durrett_Schweinsberg_Expected_SFS

The C code computes exact expected branch length spectrum for Example 2.4 in Durrett and Schweinsberg (2005).

You will need the GSL library. The code should be error-free, and you can compile it with e.g.

gcc -Wall -O3 -mtune=corei7 -march=native -DNDEBUG ebi_eb_logits_DS_Example24.c -lm -lgsl -lgslcblas

and run it as ./a.out (sample size) (c parameter)

An example comparison to data for a single chromosome from Atlantic cod

dsgraph_1

About

C code for computing exact expected branch length spectrum of a Lambda-coalescent, in particular Example 2.4 in Durrett and Schweinsberg (2005)

Topics

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages