egeulgen pathfindR Q A · Discussions · GitHub

Sort by: Latest activity

Categories

Q&A Discussions

Ask the community for help

You must be logged in to vote

Single cell RNAseq

ggonnella asked Feb 19, 2024 in Q&A · Closed · Answered

1
You must be logged in to vote

Is it possible to use Reactome terms of mouse for the search?

fengx90 asked Jul 21, 2023 in Q&A · Closed · Unanswered

1
You must be logged in to vote

problem with my own data

kratzera asked May 27, 2023 in Q&A · Closed · Answered

2
You must be logged in to vote

Normalized effect size to tell the direction of enrichment

eclarsen-10 asked Feb 9, 2023 in Q&A · Unanswered

1
You must be logged in to vote

RA_outpu error

Shivani8898 asked Oct 22, 2022 in Q&A · Unanswered

8
You must be logged in to vote

Pathway score calculations?

junli1988 asked Aug 25, 2022 in Q&A · Answered

1
You must be logged in to vote

Legend overlapping with network nodes in term visualizations? How to resolve the overlap issues?

junli1988 asked Aug 23, 2022 in Q&A · Answered

4
You must be logged in to vote

Filtering by the number of occurences

darco98 asked Jul 25, 2022 in Q&A · Answered

2
You must be logged in to vote

Not sure my input table is good for the analysis

cleopatraface asked Jun 14, 2022 in Q&A · Answered

3
You must be logged in to vote

Is it possible to specify a minimum gene number presented in pathways for enrichement?

fengx90 asked Apr 13, 2022 in Q&A · Answered

1
You must be logged in to vote

Is it possible to increase the gene label size in Combined Results Graph?

fengx90 asked Mar 3, 2022 in Q&A · Answered

5
You must be logged in to vote

"None of the genes were in the PIN"

Jmperez2080 asked Feb 2, 2022 in Q&A · Answered

1
You must be logged in to vote

Could we use the q value instead of the p value?

powerhorse1986 asked Dec 22, 2021 in Q&A · Answered

1
You must be logged in to vote

Question about the red and green colors on the KEGG pictures

powerhorse1986 asked Nov 9, 2021 in Q&A · Unanswered

9
You must be logged in to vote

Issue with Isoform ID

daacarri asked Oct 30, 2021 in Q&A · Unanswered

1
You must be logged in to vote

Combined_res question

daacarri asked Sep 24, 2021 in Q&A · Answered

3
You must be logged in to vote

Result of running pathfindR is "NAs introduced by coercion"

obearap asked Sep 13, 2021 in Q&A · Answered

6
You must be logged in to vote

Error in get_pin_file options

adolfoisla asked Jun 6, 2021 in Q&A · Answered

1
You must be logged in to vote

Running pathfindR generates an error message in file(con, "wb")

elouiseek asked May 6, 2021 in Q&A · Unanswered

12
You must be logged in to vote

what do the values listed in the output from pathfindR signify

obearap asked Mar 15, 2021 in Q&A · Unanswered

1
You must be logged in to vote

Running pathfindR package generates an error message

obearap asked Dec 24, 2020 in Q&A · Answered

3
You must be logged in to vote

pathdinfR output for RNAseq and DIA_proteomics data

masaver asked Dec 10, 2020 in Q&A · Answered

5
You must be logged in to vote

input to pathfindR

masaver asked Nov 26, 2020 in Q&A · Answered

1
You must be logged in to vote

Change colors in graph and legend

yolpanhchana asked Oct 5, 2020 in Q&A · Answered

2
You must be logged in to vote

Using pathfindR with different species

eonurk asked Sep 21, 2020 in Q&A · Answered

1