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@dib-lab/kSpider

Ubuntu Open Issues GitHub PyPI - Wheel Maintained PyPI - Python Version

📖 Table of Contents

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➤ Table of Contents

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➤ Introduction

kSpider is a user-friendly command line interface program to perform sequence clustering. First, it creates an index using kProcessor for the source sequences. Second, it constructs a pairwise containment matrix through a single iteration over the index. Finally, it builds a graph from the pairwise matrix and applies a connected-components graph algorithm to extract the clusters with a user-defined containment threshold.

Documentations are hosted at https://dib-lab.github.io/kSpider

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➤ Quick Installation (pip)

pip install kSpider

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➤ Manual build / Development

Install dependencies

sudo apt-get install g++ swig cmake python3-dev zlib1g-dev libghc-bzlib-dev python3-distutils libboost-all-dev
git clone https://github.com/dib-lab/kSpider.git
cd kSpider
git submodule update --init --recursive
cmake -Bbuild
cmake --build build
bash build_wrapper.sh

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➤ Authors

You? Tamer Mansour
Mohamed Abuelanin Tamer Manosur

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➤ License

Licensed under MIT License.