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OrthoFinder v2.5.1
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@davidemms davidemms released this 30 Nov 15:44
· 70 commits to master since this release
2.5.1
68a83f1
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Learn about vigilant mode.

New in this release

  • Significant speed improvements for large analyses
    • For analyses of ~200 species total run times are 2-4x faster
    • Parallelisation of final ortholog inference stage of algorithm (number of threads is controlled using "-a" option)
    • For MSA tree inference OrthoFinder performs light trimming of the MSA. This prevents the runtime being dominated by tree inference for the largest orthogroups with very gappy MSAs.
    • The tree inference using multiple sequence alignments option ("-M msa") is now comparable in speed to the default DendroBLAST method.
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