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OrthoFinder v2.3.14 (stable)
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@davidemms davidemms released this 15 Jul 15:52
2.3.14
5818ef6

This is a stable release that fixes any known issues in the previous release.

Which package to download:

  • On Linux download OrthoFinder.tar.gz. This bundles all the required external dependencies (mcl, diamond, fastme) and python libraries and so should run immediately, without any installation being required.
  • On Mac the bioconda package is probably the easiest method: See Bioconda getting started and, once bioconda is set up, run conda install orthofinder
  • On either platform you can run the source code version but you will need to have python and the numpy & scipy libraries installed.
  • On Windows the best way is to install the Windows Subsystem for Linux and then use the linux version
    More detailed instructions here: https://davidemms.github.io/orthofinder_tutorials/alternative-ways-of-getting-OrthoFinder.html

Issues resolved

  • 'taskset' was previously used to resolve a problem with CPU affinity affecting python multiprocessing. This should no longer be an issue and has been removed.
  • Issue warning and continue if MSA fails, resolves #407
  • Fix to allow new directory in current directory, resolves #403
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