Releases: cov-lineages/pango-designation
pango designations 1.1.28
- Added lineage B.1.351.3 from issue #65 . B.1.351.3 contains 99 new sequence designations and 1 sequence with an updated designation (Bangladesh/BCSIR-NILMRC-448/2021, previously designated B.1.351)
pango designations v1.1.27
Release notes
Removal of low coverage B.1 sequences wrt issue #64.
pango designations v1.1.26
- Added new lineage B.1.1.522 containing 45 new sequence designations
pango designations v1.1.25
- Added new lineage AU.2 with 24 new sequence designations
- Added new lineage AU.3 with 48 new sequence designations
pango designations v1.1.24
Added new lineage AU.1 with 353 sequence designations
Designation of sequence Australia/QLD1550/2021 updated from B.1.466.2 to AU.1
pango designations v1.1.23
Release notes
Update to designations of lineage B.1.575 and B.1.575.1.
USA and Aruba lineage with spike mutations "S:P681H","S:S494P" and "S:T716I".
From all SARS-CoV-2 genomes on GISAID as of 2021-04-25, any sequences with at least 8 of the SNPs below were aligned with a selection of B.1 genomes to place them within B.1 diversity. These sequences include previously designated B.1.575 sequences and a couple of sequences that had previously been designated as B.1.1.335.
snps = [
"S:D614G",
"S:P681H",
"S:S494P",
"S:T716I",
"N:T205I",
"orf1ab:T3750I",
"orf1ab:T3255I",
"orf1ab:T265I",
"M:182T",
"orf3a:Q57H"
]
Total designations of B.1.575 and sublineage B.1.575.1:
B.1.575 1,571
B.1.575.1 168
Designation changed to B.1.575:
2 B.1.1.335 sequences
See changes in commit 8a5d954.
pango designations v1.1.22
Release notes
Addressing pangolearn issue #6, B.1.562.3 typo of B.1.526.3. 11 sequences changed.
pango designations v1.1.21
v1.1.20
pango designations v1.1.19
Release notes
Update to B.1.617 to now designate specific sublineages representing three clusters. Full description found at #49 .
Final counts for updated designations:
B.1 40
B.1.617 1
B.1.617.1 468
B.1.617.2 112
B.1.617.3 23