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424 Open 362 Closed
424 Open 362 Closed
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Issues list

Evaluation expressions that timeout can raise JSONDecodeError
#1999 opened May 13, 2024 by brettcs
CWL Conditionals, when component doesn't handle condition when tool input parameter is a non-optional file with loadContents set to true
#1969 opened Jan 21, 2024 by alexiswl
2
Add CITATION.cff / codemeta.json file
#1967 opened Jan 16, 2024 by mr-c
installing for regular users: use pipx
#1946 opened Nov 24, 2023 by mr-c
cwltool --validate is success --make-template becomes failure
#1944 opened Nov 15, 2023 by manabuishii
cwltool --pack does not handle collisions correctly
#1937 opened Nov 6, 2023 by mvdbeek
2
switch from setuptools to hatchling?
#1935 opened Oct 24, 2023 by mr-c
1
regression of cwltool performance by 5-7 minutes around 1st of june
#1916 opened Sep 29, 2023 by azat-badretdin
9
shutil.rmtree fails in M2 mac
#1913 opened Sep 27, 2023 by naga-onu
3
cwltool throws an error when secondaryFiles are specified as a list in a workflow and as a single element in a tool
#1912 opened Sep 22, 2023 by ThomasHickman
Schema salad error validating CWL enum definitions
#1908 opened Sep 15, 2023 by fmigneault
2
Cannot load CWL definition directly with Python objects using Factory class
#1903 opened Sep 12, 2023 by fmigneault
if the user's tmp drive is full, provide a better error message enhancement good first issue help wanted
#1899 opened Sep 5, 2023 by mr-c
Provenance capture of all information in input yaml file enhancement
#1889 opened Aug 17, 2023 by jjkoehorst
@mr-c
bind source path does not exist - cwltool keeps waiting / running does not stop
#1887 opened Aug 17, 2023 by jjkoehorst
2
Download progress from input files through yaml enhancement good first issue
#1886 opened Aug 17, 2023 by jjkoehorst
CWLProv: no trace of secondaryFiles for workflow activity
#1879 opened Jul 20, 2023 by simleo
cwltool 4.0.0: defined public APIs, semver versioning
#1875 opened Jul 10, 2023 by mr-c
cwltool --validate should error on jshint errors and certain warnings
#1874 opened Jul 6, 2023 by tetron
cwltool --validate doesn't check for InlineJavascriptRequirement when it should
#1873 opened Jul 4, 2023 by sjaenick
1
--tmpdir-prefix argument not checked for trailing delimiter
#1860 opened Jun 13, 2023 by sjaenick
Executing workflow from argument file with provenance not working as expected
#1843 opened May 18, 2023 by jjkoehorst
location url not executed correctly with --cachedir CACHE
#1842 opened May 18, 2023 by jjkoehorst
1
temp dir not respected with http retrieval
#1841 opened May 17, 2023 by jjkoehorst
add "cwltool:outdir" support for input YAML enhancement good first issue
#1837 opened May 9, 2023 by mr-c
ProTip! Updated in the last three days: updated:>2024-05-10.