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Issues: cfe-lab/MiCall

Evaluate other assemblers
#665 opened Jan 18, 2021 by donkirkby
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Issues list

Remove old stitching code.
#1087 opened Apr 26, 2024 by Donaim 7.18
@Donaim
Refactor the visualizer to make it at least somewhat readable. enhancement
#1086 opened Apr 26, 2024 by Donaim 7.18
@Donaim
Write conseq_ins_csv to the output directory enhancement
#1085 opened Apr 26, 2024 by Donaim 7.18
Feature Proposal: a Merger Tool
#1036 opened Feb 12, 2024 by Donaim
1 of 8 tasks
7.18
1
@Donaim
1
Multiple python interpreters in dev container cause issues bug config change Requires a configuration change during release.
#1033 opened Nov 9, 2023 by Donaim 7.18
@Donaim
4
Aligning to defective start codon in vpu bug
#1024 opened Oct 13, 2023 by Donaim 7.18
Update to Python 3.11
#981 opened Jun 27, 2023 by CBeelen 7.18
@Donaim
Add capsid gene region for CAI drug class
#972 opened Jun 6, 2023 by CBeelen
3 tasks
7.18
Improve coordinate concordance
#965 opened May 19, 2023 by CBeelen 7.18
Resistance run fails on Kive if the input files have already been purged
#921 opened Jan 25, 2023 by CBeelen
Pin merge-mates to a tag?
#893 opened Nov 14, 2022 by CBeelen 7.18
Sample sheet parser fails when enum contains an underscore
#888 opened Nov 10, 2022 by CBeelen 7.18
2
Proviral upload into QAI fails
#886 opened Nov 7, 2022 by CBeelen 7.18
1
Collate outputs in Kive
#876 opened Oct 5, 2022 by donkirkby 7.18
1
Upload HIVSeqinR
#844 opened May 17, 2022 by donkirkby
1
New MiSeq software
#843 opened May 17, 2022 by donkirkby
Update minimap2 to the newest version
#840 opened May 11, 2022 by CBeelen 7.18
1
Insertion counts for small insertions that change the reading frame
#836 opened May 10, 2022 by CBeelen 7.18
Score alignments?
#826 opened Mar 30, 2022 by CBeelen
3 tasks
near future
Add insertion sequence to nuc.csv and amino.csv
#768 opened Nov 10, 2021 by CBeelen 7.18
Evidence for joins in contigs
#764 opened Oct 28, 2021 by donkirkby 7.18
Add coverage plots and scores for non-coding regions
#725 opened Jul 5, 2021 by donkirkby
2 tasks
Negative mapped count in QAI bug
#719 opened Jun 21, 2021 by donkirkby
Evaluate other assemblers
#665 opened Jan 18, 2021 by donkirkby
8 of 13 tasks
@CBeelen
15
unpack_mixtures_and_reverse becomes computationally intractable when sequence has many ambiguous characters
#637 opened Nov 4, 2020 by dmacmillan
5
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