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@calico

Calico

Popular repositories

  1. basenji basenji Public

    Sequential regulatory activity predictions with deep convolutional neural networks.

    Python 372 119

  2. scBasset scBasset Public

    Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

    Jupyter Notebook 86 11

  3. solo solo Public

    software to detect doublets

    Python 77 13

  4. scnym scnym Public

    Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

    Python 73 12

  5. borzoi borzoi Public

    RNA-seq prediction with deep convolutional neural networks.

    Python 57 5

  6. spatial_lda spatial_lda Public

    Probabilistic topic model for identifying cellular micro-environments.

    Python 25 10

Repositories

Showing 10 of 39 repositories
  • baskerville Public

    Machine learning methods for DNA sequence analysis.

    Python 18 Apache-2.0 2 1 2 Updated Apr 25, 2024
  • romic Public

    romic represents high-dimensional measurements by persistently tracking features, samples, and measurements as a dataset is modified and reformatted. It provides a suite of functions that build on this framework to support data analysis and visualization. These functions are combined into shiny apps tailored to exploratory data analysis.

    R 5 1 6 0 Updated Apr 22, 2024
  • borzoi Public

    RNA-seq prediction with deep convolutional neural networks.

    Python 57 Apache-2.0 5 7 0 Updated Apr 19, 2024
  • impulse Public

    Fit phenomenological sigmoid and impulse curves with priors to improve interpretability

    R 10 MIT 2 0 0 Updated Apr 19, 2024
  • solo Public

    software to detect doublets

    Python 77 MIT 13 7 0 Updated Apr 6, 2024
  • claman Public

    Calico Lipidomics and Metabolomics (CLaM) Analysis provides a suite of functions which support data manipulation, statistical analysis and visualizations of mzrollDB files created by MAVEN.

    R 2 0 10 0 Updated Mar 15, 2024
  • scBasset Public

    Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

    Jupyter Notebook 86 Apache-2.0 11 3 0 Updated Feb 8, 2024
  • basenji Public

    Sequential regulatory activity predictions with deep convolutional neural networks.

    Python 372 Apache-2.0 119 68 3 Updated Jan 14, 2024
  • scnym Public

    Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

    Python 73 Apache-2.0 12 6 5 Updated Dec 11, 2023
  • R 8 GPL-2.0 2 0 0 Updated Oct 23, 2023

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