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@biosustain

DTU Biosustain

The Novo Nordisk Foundation Center for Biosustainability

Popular repositories

  1. potion potion Public

    Flask-Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine

    Python 489 51

  2. cameo cameo Public

    cameo - computer aided metabolic engineering & optimization

    Python 112 42

  3. shu shu Public

    Multi-dimensional, trans-omics metabolic maps.

    Rust 37

  4. Maud Maud Public

    Enzyme models that take into account kinetics, allostery and thermodynamics

    Python 25 2

  5. croissance croissance Public

    Tool for estimating growth rates from microbial growth curves

    Python 24 11

  6. snakemake_UmetaFlow snakemake_UmetaFlow Public

    Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake

    Python 21 8

Repositories

Showing 10 of 100 repositories
  • GEM-Exometabolome Public

    Pipeline for the integration of exometabolomic data into GEM analysis and interpretation

    MATLAB 0 MIT 0 0 0 Updated May 3, 2024
  • QconCATquantSTAR Public

    QconCAT protein quantification accompanying STAR protocol for QconCATs

    Python 0 GPL-3.0 2 0 0 Updated May 2, 2024
  • incawrapper Public

    A python wrapper for Metabolic Flux Analysis (MFA) using INCA with additional functionalities

    Python 2 MIT 0 0 0 Updated May 2, 2024
  • pankb Public

    The Pangenome Knowledge Base (PanKB) serves as an up-to-date resource for pangenomics research methods and the dissemination of results and currently offers basic pangenome characteristics and advanced pangenome analytics for six major biotech bacteria families.

    HTML 0 0 0 0 Updated May 1, 2024
  • bayesian_statistics_for_computational_biology Public

    A Bayesian statistics course for computational biologists

    HTML 2 CC-BY-4.0 1 0 0 Updated Apr 30, 2024
  • consortia_synthetic_anaerobe Public

    Supporting material for "CRISPRi-mediated metabolic switch enables concurrent aerobic and synthetic anaerobic fermentations in engineered consortium" manuscript

    HTML 0 0 0 0 Updated Apr 24, 2024
  • dsp_nf-metagenomics Public

    Shotgun metagenomics pipeline to process microbiome samples

    Shell 1 GPL-3.0 0 2 0 Updated Apr 24, 2024
  • msdap Public Forked from ftwkoopmans/msdap

    MS-DAP: downstream analysis pipeline for quantitative proteomics

    R 0 GPL-3.0 6 0 0 Updated Apr 22, 2024
  • 0 0 0 0 Updated Apr 18, 2024
  • lifelike Public

    Turning big data into contextualized knowledge. Lifelike is a modern application platform for data extraction, analysis and visualization.

    Python 0 0 0 0 Updated Apr 17, 2024

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