v1.1.1

1.1.1

• fixed bactopia-summary not working with Bakta annotations
• added support for alternative extensions in bactopia-atb-formatter @nickjhathaway 🎉

v1.10.0

1.10.0

• rework bactopia-summary for new AMRFinder+ outputs

v1.0.9

1.0.9

• added bactopia-atb-formatter to format All-the-Bacteria assemblies for Bactopia

v1.0.8

1.0.8

• Fixed bactopia-prepare usage of --prefix not working

v1.0.7

1.0.7

• Fixed bactopia-search not including header name in accessions.txt
• Added --hybrid and --short-polish to bactopia-prepare

v1.0.6

1.0.6

• Fixed bactopia-summary handling of empty searches

v1.0.5

1.0.5

• Fixed bactopia-download not building prokka and bakta conda envs

v1.0.4

1.0.4

• Fixed bactopia-summary working with new output structure

v1.0.3

1.0.3

• Fixed bactopia-search using missing columns in the query
• dropped pysradb dependency

v1.0.2

1.0.2

• Added bactopia-datasets to download optional datasets outside of Nextflow
• consistently use --bactopia-path across sub-commands