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1.0.0-alpha.3

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@althonos althonos released this 10 Oct 19:05
· 345 commits to master since this release
v1.0.0-alpha.3

Added

  • Extraction of oboInOwl:consider annotation in RdfXMLParser.
  • Extraction of oboInOwl:savedBy annotation in RdfXMLParser.
  • Extraction of subsetdef and synonymtypedef as annotation properties in
    RdfXMLParser.
  • Support for doap:Version instead of owl:VersionIri for specification
    of ontology data version.
  • Proper comparison of PropertyValue classes, based on the lexicographic order
    of their serialization.
  • Ontology.dump and Ontology.dumps methods to serialize an ontology in
    obo or obojson format.

Fixed

  • Metadata not storing optional description of ID spaces if any.
  • Wrong type hints in RelationshipData.equivalent_to_chain.

Changed

  • Added type checking to some more property setters.
  • Avoid using networkx in Term.subclasses.
  • fastobo-derived parsers will not create a new entity if one exists in the
    graph of dependencies already.
  • Exposed pronto.warnings and the complete warnings hierarchy.