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Issues: aertslab/pySCENIC

Possible solutions for GRNBoost2/GENIE3 Dask issues
#163 opened May 1, 2020 by cflerin
Open 2
pySCENIC for other species
#172 by singcell was closed Apr 11, 2022
Closed 3
Aggregating results across pySCENIC runs
#169 by diegoalexespi was closed Feb 18, 2021
Closed 6
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157 Open 336 Closed
157 Open 336 Closed
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Issues list

[BUG] AttributeError: module 'numpy' has no attribute 'float'. bug Something isn't working
#543 opened May 3, 2024 by juniajvs
1
[question] hg19 tf list bug Something isn't working
#541 opened Apr 22, 2024 by colin893
[BUG] the binary binary_mtx, auc_thresholds = binarize(auc_mtx, num_workers = 15) get error bug Something isn't working
#540 opened Apr 19, 2024 by honghh2018
1
Is pyscenic grn proceeding? It does not throw any responses. question Further information is requested
#538 opened Apr 12, 2024 by hansong798
1
[results]Transcription factor activity from AUCell result question Further information is requested
#537 opened Apr 9, 2024 by QianLLLL
Why does the same transcription factor have many regulons? question Further information is requested
#535 opened Mar 22, 2024 by M-jk22
4
[BUG] Less than 80% of the genes [...] warning with cisTarget step + Pruning gets rid of many regulons bug Something isn't working
#534 opened Mar 21, 2024 by VincentGardeux
1
/usr/bin/sh: 1: pyscenic: not found [BUG] bug Something isn't working
#532 opened Mar 14, 2024 by RolantusdataExp
3
[BUG] pySCENIC installation error bug Something isn't working
#531 opened Mar 6, 2024 by strawberry098
1
[BUG] early termination of pyscenic ctx with no error message bug Something isn't working
#528 opened Feb 9, 2024 by Mira0507
3
[BUG]Expression matrix should be provided in the loom file format/The loom doesn't contain regulon information bug Something isn't working
#527 opened Jan 30, 2024 by HaixJiang
5
Error running GRNBoost2 step
#525 opened Jan 18, 2024 by eblchen
14
large dataset failed bug Something isn't working
#524 opened Jan 11, 2024 by wangjiawen2013
1
[BUG]not shutting down client, client was created externally bug Something isn't working
#522 opened Dec 17, 2023 by asmlgkj
1
auc bug bug Something isn't working
#520 opened Dec 10, 2023 by AnjaliS1
1
how to merge loom file of per celltype and to visualize？ question Further information is requested
#519 opened Dec 3, 2023 by Jingle0814
[BUG] Installation error bug Something isn't working
#518 opened Dec 1, 2023 by as7a5
2
PyScenic ctx output (AUC values) [results] question Further information is requested
#517 opened Dec 1, 2023 by stefanerb89
[results] Question about pySCENIC result question Further information is requested
#516 opened Nov 27, 2023 by watermelontreesjs
[BUG] pyscenic.transform warning/error bug Something isn't working
#515 opened Nov 27, 2023 by stefanerb89
1
pyscenic ctx Error: pandas.errors.ParserError: Could not construct index. Requested to use 2 number of columns, but 3 left to parse bug Something isn't working
#512 opened Nov 19, 2023 by zhrmxxs
2
Similare Transcription factor in TF resources question Further information is requested
#511 opened Nov 3, 2023 by Erfan1369
1
pyscenic aucell command does not complete bug Something isn't working
#510 opened Oct 18, 2023 by leeanapeters
1
[BUG]pyscenic ctx --no_pruning bug Something isn't working
#506 opened Sep 27, 2023 by ken-chen-18
[BUG] unexpected changing of data type in dataframe bug Something isn't working
#505 opened Sep 21, 2023 by whoisleehom
4
ProTip! Updated in the last three days: updated:>2024-05-06.