Pinned
Repositories
- single_cell_toolkit Public
Tools for correcting single cell barcodes for various scATAC-seq techniques.
- scenicplus Public
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
- PUMATAC_tutorial Public
- pycisTopic Public
pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
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- pycistarget Public
pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence TF cistromes.
- biopython Public Forked from biopython/biopython
Official git repository for Biopython (converted from CVS)
- pySCENIC Public
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
