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v0.2.3 (November 17th, 2014)

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@olgabot olgabot released this 18 Nov 17:52
· 2364 commits to master since this release

This is a patch release, with non-breaking changes from v0.2.2.

Compute functions

  • Restore Study.detect_outliers Study.interactive_choose_outliers and Study.interactive_reset_outliers

Plotting functions

  • Add Study-level NMF space transitions/positions

Bug Fixes

  • embark wouldn't work if metadata didn't have a pooled column,
    now it does
  • BaseData.drop_outliers would actually drop samples from the data,
    but we never want to remove data, only mark it as something to be removed so
    all the original data is there
  • For all compute submodules, add a check to make sure the input
    data is truly a probability distribution (non-negative, sums to 1)
  • BaseData.plot_feature now plots all features with the same name
    (e.g. all splicing events within that gene) onto a single fig object

Documentation

  • Restore some lost documentation on :py:class:.BaseData and
    :py:class:.Study

Other

  • Rename modalities that couldn't be assigned when bootstrapped=True in
    compute.splicing.Modalities, from "unassigned" to "ambiguous"