Popular repositories

1. flotilla flotilla Public

   Reproducible machine learning analysis of gene expression and alternative splicing data

   Jupyter Notebook 121 26

2. single-cell-bioinformatics single-cell-bioinformatics Public archive

   Course material in notebook format for learning about single cell bioinformatics methods

   Jupyter Notebook 95 37

3. clipper clipper Public

   A tool to identify CLIP-seq peaks

   Python 61 41

4. outrigger outrigger Public

   Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data

   Python 60 22

5. sailor sailor Public

   CWL+Singularity implementation of an RNA editing workflow

   Jupyter Notebook 38 13

6. eCLIP eCLIP Public

   Common Workflow Language 36 26