This repository has been archived by the owner on Aug 25, 2023. It is now read-only.
Merge rc into main. (#8) * moved get_gem_data within the Interface class. * minor updates, transfering work * merging changes.. * updated plotting functions. * bug fixes, travis_dev * bug fixes * current work for remote * updated samplewise plots and notebooks * code updates, machine transfer * new notebooks * updates and transfer * bugs squashed, notebooks updated, travis_dev * changed dockerfile pip install to user. * updated gitignore, travis_dev * updated dockerfile, travis_dev * fixed missing -p in mkdir of dockerfile. * docker file permission woes, travis_dev * more docker fixes, travis_dev * more docker woes, travis_dev * changed to python 3.7 in docker image * docker test, travis_dev * docker fixed? travis_dev * more docker fixes, travis_dev * moving code * prep for release tag * rc prep, travis_dev * added upsetplot to requirements, travis_dev * removed "offset" command from nbsite command, travis_dev * minor fixes, travis_dev * doc reorg push * documentation updates * docs working locally * doc updates * more minor doc fixes, travis_dev * updated docs install requirements, travis_dev * added kernelspec definition to travis.yml, travis_dev * fixed more travis.yml stuff, travis_dev * removed example copy from dockerfile, travis_dev * conf.py fix for readthedocs theme, travis_dev * removed underscores from docs folders for github pages, travis_dev * added a .nojekyll for GH-pages * same, travis_dev * now with the dev process, travis_dev * fixed filepaths in travis.yml for nojekyll, travis_dev * fixed same error for release deploy * minor fixes and doc updates * refactored GeneSet get_n_top_genes into separate funcs * doc updates, travis_dev * nf prep, travis_dev * travis_dev * nf config profile added * repaired analytics * updated boruta multiclass script * go travs? travis_dev * doc updates, travis_dev * docs updated, travis_dev * tour run updated * walkthrough notebooks ran * updated docs, travis_dev * doc updates, travis_dev * fixed filepahths, travis_dev * Removed notebook cache. * Removed notebook cache. travis_dev * go travis_dev * go travis_dev * removed notebooks from travis running * refactored docs, travis_dev * Updated documentation. Local docs building via docker. * Refactored gene_support to get_support. * Prep master merge. travis_dev * Prep master merge again. travis_dev * Added package versions. travis_dev Co-authored-by: root <root@MSI.localdomain>