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@SystemsGenetics

SystemsGenetics

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  1. GEMmaker GEMmaker Public

    A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction

    Nextflow 33 16

  2. KINC KINC Public

    Knowledge Independent Network Construction

    C++ 11 4

  3. FUNC-E FUNC-E Public

    FUNC-E performs functional enrichment of gene lists. It follows a similar approach to that of DAVID

    Python 5 3

Repositories

Showing 10 of 25 repositories
  • granny Public
    Python 0 GPL-3.0 1 1 0 Updated Apr 24, 2024
  • GEMmaker Public

    A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction

    Nextflow 33 MIT 16 35 0 Updated Jan 30, 2024
  • FUNC-E Public

    FUNC-E performs functional enrichment of gene lists. It follows a similar approach to that of DAVID

    Python 5 GPL-3.0 3 4 0 Updated Sep 26, 2023
  • EnTAPnf Public

    Functional Annotation of Gene Lists

    Nextflow 3 MIT 4 5 0 Updated Nov 28, 2022
  • KINC Public

    Knowledge Independent Network Construction

    C++ 11 MIT 4 25 0 Updated Oct 31, 2022
  • configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    Nextflow 0 MIT 258 0 0 Updated May 4, 2022
  • pynome-nf Public

    Nextflow implementation of Pynome for retrieval and parallel indexing of public whole genomes.

    Nextflow 0 GPL-3.0 0 0 0 Updated Apr 28, 2022
  • pynome Public

    Genome collection script for the SciDAS project.

    Python 0 GPL-3.0 0 1 0 Updated Apr 28, 2022
  • KINC-nf Public

    Nextflow pipeline for KINC

    Nextflow 1 1 2 0 Updated Feb 14, 2022
  • kube-runner Public

    A tool for running bioinformatics workflows on a Kubernetes cluster

    Shell 10 4 2 0 Updated Feb 2, 2022
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