{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"granny","owner":"SystemsGenetics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-09T00:03:08.811Z"}},{"type":"Public","name":"GEMmaker","owner":"SystemsGenetics","isFork":false,"description":"A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":35,"starsCount":33,"forksCount":16,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-30T18:29:34.433Z"}},{"type":"Public","name":"FUNC-E","owner":"SystemsGenetics","isFork":false,"description":"FUNC-E performs functional enrichment of gene lists. It follows a similar approach to that of DAVID","topicNames":["functional-enrichment-analysis","bioinformatics"],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":4,"starsCount":5,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-26T00:16:44.848Z"}},{"type":"Public","name":"EnTAPnf","owner":"SystemsGenetics","isFork":false,"description":"Functional Annotation of Gene Lists","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":5,"starsCount":3,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-11-28T18:02:58.821Z"}},{"type":"Public","name":"KINC","owner":"SystemsGenetics","isFork":false,"description":"Knowledge Independent Network Construction","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":25,"starsCount":11,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-10-31T22:34:40.751Z"}},{"type":"Public","name":"configs","owner":"SystemsGenetics","isFork":true,"description":"Config files used to define parameters specific to compute environments at different Institutions","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":256,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-04T15:00:47.540Z"}},{"type":"Public","name":"pynome-nf","owner":"SystemsGenetics","isFork":false,"description":"Nextflow implementation of Pynome for retrieval and parallel indexing of public whole genomes.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-04-28T23:16:31.580Z"}},{"type":"Public","name":"pynome","owner":"SystemsGenetics","isFork":false,"description":"Genome collection script for the SciDAS project.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-04-28T23:01:27.842Z"}},{"type":"Public","name":"KINC-nf","owner":"SystemsGenetics","isFork":false,"description":"Nextflow pipeline for KINC","topicNames":["docker","nextflow"],"topicsNotShown":0,"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":2,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-14T21:49:45.609Z"}},{"type":"Public","name":"kube-runner","owner":"SystemsGenetics","isFork":false,"description":"A tool for running bioinformatics workflows on a Kubernetes cluster","topicNames":["kubernetes","nextflow"],"topicsNotShown":0,"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":2,"starsCount":10,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-02-02T17:25:16.853Z"}},{"type":"Public","name":"awesome-feltus","owner":"SystemsGenetics","isFork":false,"description":"A repository for how to be awesome in the Feltus lab","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":3,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-12-03T16:47:04.429Z"}},{"type":"Public","name":"transcript_corral","owner":"SystemsGenetics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":3,"starsCount":1,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-12-02T23:25:42.504Z"}},{"type":"Public","name":"KINC.R","owner":"SystemsGenetics","isFork":false,"description":"Supplemental R package for KINC","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":4,"starsCount":2,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-08T18:43:21.644Z"}},{"type":"Public","name":"GEMprep","owner":"SystemsGenetics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":2,"starsCount":3,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-09-29T15:16:10.902Z"}},{"type":"Public","name":"gene-oracle","owner":"SystemsGenetics","isFork":false,"description":"Feature extraction algorithm for genomic data","topicNames":["machine-learning","bioinformatics","rna-seq","deep-learning","genetic-algorithm","gene","dataset"],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":13,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-09-28T19:46:49.608Z"}},{"type":"Public","name":"GSForgeDev","owner":"SystemsGenetics","isFork":false,"description":"A placeholder repository for the dev version of the docs website.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-18T21:59:10.467Z"}},{"type":"Public","name":"ACE","owner":"SystemsGenetics","isFork":false,"description":"Accelerated Computational Engine (ACE) is a GPU-enabled framework to simplify creation of GPU-capable applications","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":1,"issueCount":4,"starsCount":1,"forksCount":1,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-04-28T16:45:15.339Z"}},{"type":"Public","name":"GEM_Smasher","owner":"SystemsGenetics","isFork":false,"description":"A gene expression matrix exploration tool set.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-04-02T19:59:55.739Z"}},{"type":"Public","name":"irods-docker","owner":"SystemsGenetics","isFork":false,"description":"Docker / Singularity image for using the iRODS client commands on HPC systems","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-02-20T21:07:16.802Z"}},{"type":"Public","name":"BioDepVis","owner":"SystemsGenetics","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":9,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-02-05T23:04:17.401Z"}},{"type":"Public","name":"KINC-v1-Singularity","owner":"SystemsGenetics","isFork":false,"description":"Instructions for running KINC v1.0 using a Singularity Image","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-03-01T20:45:10.629Z"}}],"repositoryCount":21,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"mirror","text":"Mirrors"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}