adding virulencefinder version 2.0.5 #927
Open
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There's a new version of virulencefinder!
Admittedly, I am unclear what is new in this version, but I'm sure there are some bug fixes or new features.
When I went about updating the Dockerfile, I did attempt to update the base image to ubuntu:jammy. This resulted in python incompatibilities issues (ubuntu:jammy's default python 3 is 3.10) among other errors.
Therefore, I kept everything in the prior dockerfile and updated the software version, database version, and kma version. I also added a CMD line and changed the tabs.
The differences between 2.0.4 and 2.0.5:
Pull Request (PR) checklist:
docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15
)spades/3.12.0/Dockerfile
)shigatyper/2.0.1/test.sh
)spades/3.12.0/README.md
)