Skip to content
View kapsakcj's full-sized avatar
🏠
Working from home
🏠
Working from home
110 followers · 334 following

Achievements

Achievement: Pair Extraordinairex2Achievement: Starstruckx2Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor
BetaSend feedback

Achievements

Achievement: Pair Extraordinairex2Achievement: Starstruckx2Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor
BetaSend feedback
Block or Report

Block or report kapsakcj

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
kapsakcj/README.md

Hi there 👋

Hi! I'm Curtis. I'm a bioinformatician working with Theiagen Genomics. I'm a fan of microbial genomics 🦠, reproducible bioinformatics methods ♻️, and DNA sequencing 🧬!

  • 🌱 I’m currently learning Python, WDL, Nextflow, and Continuous Integration techniques
  • 👯 I’m looking to collaborate on developing dockerfiles to make installation and usage of bioinformatics tools easier! See here
  • 💬 Ask me about - Microbial & viral genomes, plasmids, software containers
  • 📫 How to reach me - Twitter, LinkedIn, email kapsakcj (at) gmail (dot) com,
  • 😄 Pronouns - He/Him

Pinned

  1. StaPH-B/docker-builds StaPH-B/docker-builds Public

    📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

    Dockerfile 170 115

  2. theiagen/public_health_bioinformatics theiagen/public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    WDL 33 15

  3. theiagen/public_health_viral_genomics theiagen/public_health_viral_genomics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2

    WDL 38 17

  4. theiagen/public_health_bacterial_genomics theiagen/public_health_bacterial_genomics Public

    WDL 26 14

  5. win10-linux-conda-how-to win10-linux-conda-how-to Public

    A tutorial on how to set up a Linux environment on a computer running Windows 10. Followed by how to install and use (bio)conda.

    36 8

  6. nanoporeWorkflow nanoporeWorkflow Public

    🧬 Shell scripts for working with bacterial isolate Nanopore sequence data on CDC servers

    Shell 9 3