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hap-py: init 0.3.15 #283881

Merged
merged 2 commits into from Apr 8, 2024
Merged

hap-py: init 0.3.15 #283881

merged 2 commits into from Apr 8, 2024

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apraga
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@apraga apraga commented Jan 25, 2024

New package for genetics : helps compared variants called by a pipeline to a reference.

The only tests not passing are due to a difference in float representation (same value but with
different number of digits after decimal).

For best results (quality and running time), the
authors advice to use RTGtools vcfeval as the
engine. So this package requires #230394

Description of changes

Things done

  • Built on platform(s)
    • x86_64-linux
    • aarch64-linux
    • x86_64-darwin
    • aarch64-darwin
  • For non-Linux: Is sandboxing enabled in nix.conf? (See Nix manual)
    • sandbox = relaxed
    • sandbox = true
  • Tested, as applicable:
  • Tested compilation of all packages that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD". Note: all changes have to be committed, also see nixpkgs-review usage
  • Tested basic functionality of all binary files (usually in ./result/bin/)
  • 24.05 Release Notes (or backporting 23.05 and 23.11 Release notes)
    • (Package updates) Added a release notes entry if the change is major or breaking
    • (Module updates) Added a release notes entry if the change is significant
    • (Module addition) Added a release notes entry if adding a new NixOS module
  • Fits CONTRIBUTING.md.

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This pull request has been mentioned on NixOS Discourse. There might be relevant details there:

https://discourse.nixos.org/t/prs-ready-for-review/3032/3701

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@apraga apraga force-pushed the hap-py-0.3.15 branch 2 times, most recently from 28be50e to 40e9f60 Compare March 30, 2024 13:27
@apraga
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apraga commented Mar 30, 2024

Thanks for your helpful review ! The derivation has been improved to match your suggestions (except the one waiting on
#23039).

New package for genetics : helps compared variants
called by a pipeline to a reference.

The only tests not passing are due to a difference
in float representation (same value but with
different number of digits after decimal).
For best results (quality and running time), the
authors advice to use RTGtools vcfeval as the
engine.

Depends on NixOS#230394
@apraga
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apraga commented Apr 7, 2024

PR needed for this PR has been merged (thanks !). If you are OK with this PR, could you merge it too ?

@SuperSandro2000 SuperSandro2000 merged commit 4d49db5 into NixOS:master Apr 8, 2024
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3 participants