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hap-py: use rtgtools vcfeval as default core
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For best results (quality and running time), the
authors advice to use RTGtools vcfeval as the
engine.

Depends on #230394
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apraga committed Feb 14, 2024
1 parent ad2c607 commit de9d5e5
Showing 1 changed file with 2 additions and 0 deletions.
2 changes: 2 additions & 0 deletions pkgs/by-name/ha/hap-py/package.nix
Expand Up @@ -41,6 +41,7 @@ stdenv.mkDerivation rec {
curl
htslib
my-python
rtg-tools
xz
zlib
];
Expand All @@ -49,6 +50,7 @@ stdenv.mkDerivation rec {
postFixup = ''
wrapProgram $out/bin/hap.py \
--set PATH ${lib.makeBinPath runtime}
--add-flags "--engine-vcfeval-path=${rtg-tools}/bin/rtg
'';

meta = with lib; {
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