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notebooks

notebooks

 
 

scvi_final_summaries

scvi_final_summaries

 
 

stan_models

stan_models

 
 

.gitignore

.gitignore

 
 

LICENSE

LICENSE

 
 

README.md

README.md

 
 

piecewise_stan_model.stan

piecewise_stan_model.stan

 
 

run_pystan.py

run_pystan.py

 
 

snakemake1_kb_subsampling.py

snakemake1_kb_subsampling.py

 
 

snakemake2_make_h5ads.py

snakemake2_make_h5ads.py

 
 

snakemake3_run_scvi.py

snakemake3_run_scvi.py

 
 

snakemake4_run_pystan.py

snakemake4_run_pystan.py

 
 

transformed_piecewise_stan_model.stan

transformed_piecewise_stan_model.stan

 
 

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seqdepth2020

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Code and notebooks for seqdepth project

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