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Achievement: StarstruckAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
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Achievement: StarstruckAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
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Pinned

  1. WormBase/scdefg WormBase/scdefg Public

    A single page Flask app with a GUI for performing differential expression with scvi-tools. Returns a volcano plot and downloadable tables with DE results.

    Python 3 1

  2. WormBase/wormcells-viz WormBase/wormcells-viz Public

    Visualization tools for C. elegans single cell RNA sequencing data

    JavaScript 2

  3. seqdepth seqdepth Public

    Code and notebooks for seqdepth project

    Jupyter Notebook

  4. pachterlab/poseidon pachterlab/poseidon Public

    poseidon system - open source syringe pumps and microscope for laboratories

    Jupyter Notebook 168 52

  5. pachterlab/SBP_2019 pachterlab/SBP_2019 Public

    Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscript

    Jupyter Notebook 15 1

  6. vals/single-cell-studies vals/single-cell-studies Public

    Example analysis using the 'Single cell studies database'

    Jupyter Notebook 7 2