Jupyter notebook repository for the assignment of the course Regulatory genomics, MSc of Bioinformatics, KU Leuven, 2023
Bulk RNAseq of olfactory gene clusters in Drosophila
- Master notebook
- Genome mapping with STAR and calculating read counts using featureCounts
- DESeq2 analysis with MA plot
SMC3-ChIPseq of a neural cell
- Genome mapping with bowtie2, count pile-up, coverage plots, peak calling with macs2, RSAT de novo motif discovery and i-CisTarget motif enrichment analysis, GO terms analysis with GREAT