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bulk RNAseq of olfactory gene clusters in Drosophila & SMC3-ChIPseq of a neural cell

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LucoDevro/Regulatory-Genomics-RNAseqchipSeq

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Regulatory-Genomics-RNAseqchipSeq

Jupyter notebook repository for the assignment of the course Regulatory genomics, MSc of Bioinformatics, KU Leuven, 2023

Contents:

Bulk RNAseq of olfactory gene clusters in Drosophila

  • Master notebook
  • Genome mapping with STAR and calculating read counts using featureCounts
  • DESeq2 analysis with MA plot

SMC3-ChIPseq of a neural cell

  • Genome mapping with bowtie2, count pile-up, coverage plots, peak calling with macs2, RSAT de novo motif discovery and i-CisTarget motif enrichment analysis, GO terms analysis with GREAT

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bulk RNAseq of olfactory gene clusters in Drosophila & SMC3-ChIPseq of a neural cell

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