Code and limited results repository for the assignment for the course Comparative genomics, MSc of Bioinformatics, KU Leuven, 2023
Contents:
- BLAST both organisms against each other (
blast_both_all.pds) - Find BBHs for ortholog, paralog and co-ortholog detection (
bbh.py) - BLAST a Gloeobacter proteins against 25 handpicked proteomes to find all homologs (
get_homologs.pbs) - Parse results and identify homologs (
homologs.py) - Create a simple NJ phylogenetic tree using ClustalW (
homologs.phb) - Assess conservation across regions (
conservation.py)