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Known Issues
H5SHELL-test_flush_refresh requires Perl for CTest.
/usr/local/bin/bash: /home/runner/work/actions/actions/hdf5-1.14.4/build/test/H5TEST/test_flush_refresh.sh: No such file or directory
For example, FreeBSD 14.0 cmake package doesn't install perl5 package. (cf. automake)
It was tested 5 years ago. See YouTube video.
You may get warnings or be unable to run them without special privileges.
See 11-year-old solution for macOS binaries.
They include hidden files. Please use our tarballs, not the auto-generated ones.
https://github.com/orgs/community/discussions/6003
Install gfortran first.
dnf install gfortran
Otherwise, you get an error message
# rpm -i HDF5-1.14.4.2-1.x86_64.rpm
error: Failed dependencies:
libgfortran.so.5()(64bit) is needed by HDF5-1.14.4.2-1.x86_64
libgfortran.so.5(GFORTRAN_8)(64bit) is needed by HDF5-1.14.4.2-1.x86_64
Both Debian and Kali fail dt_arith test.
OpenSuse 15.2 hangs during configuration for both CMake & Autotools.
| OS | Compiler | Mode | Result |
|---|---|---|---|
| Win19 | MSVC | Release | PASS |
| Win19 | MSVC | Debug | FAIL |
| Win22 | icx | Release | FAIL |
| Win22 | icx | Debug | FAIL |
Win22 MSVC is fine for both Release and Debug modes.
Build is fine with both CMake and Autotools. Tests fail.
Test fails on VS 2019 clang-cl 12.0 during clean-up. MSVC is fine.
NDK and DevEco can build HDF5 with CMake. Tests will fail.
Build is fine with CMake. Some tests will fail.
Tests fail. Use CMake to make tests pass.
C11 stdatomic.h must be available. Use latest MPICH / OpenMPI to make tests pass.
Subfiling VFD requires atomic operations support. C11 stdatomic.h NOT
available.
HDF5 doesn't support 128 (or above) bit integer natively.
Ubuntu Preview / WSL doesn't work for hdf5:mingw64 package. Ubuntu 22.04 / WSL works fine.
Version 4.1.5 or above is necessary to pass all tests.
| OS | Version |
|---|---|
| Oracle Linux 9.1 | 4.1.1 |
| OpenBSD | 4.1.4 |
| Debian | 4.1.4 |
| Ubuntu Preview | 4.1.6 |
4.2 or above is necessary for all tests to pass.
| OS | Version |
|---|---|
| Oracle Linux 9.1 | 4.1.1 |
Never assume zlib output is the same. zlib works differently on different CPU architectures. Fedora now uses zlib-ng.
g++ is required. libcpp is required.
Intel oneAPI MPI is mostly 3.x and supports some 4.0.
106 - MPI_TEST_testphdf5 (Failed)
125 - MPI_TEST_t_pflush1 (Timeout)
131 - MPI_TEST_t_pmulti_dset (Failed)
132 - MPI_TEST_t_select_io_dset (Failed)
134 - MPI_TEST_t_filters_parallel (Timeout)
2532 - H5_ph5_filtered_writes (Failed)
2534 - H5_ph5_filtered_writes_no_sel (Failed)
The following tests FAILED:
5 - H5TEST-testhdf5-select (Timeout)
47 - H5TEST-set_extent (Timeout)
105 - H5SHELL-test_swmr (Timeout)
The following tests FAILED:
105 - H5SHELL-test_swmr (Timeout)
The following tests FAILED:
26 - H5TEST-dsets (Timeout)
106 - H5SHELL-test_swmr (Timeout)
dt_arith (debug & release) and dtransform (release) tests fail.
They are not supported yet.
checking if Fortran compiler version compatible with Fortran 2003... no
configure: error: Fortran compiler lacks required Fortran 2003 features; unsupported Fortran 2003 compiler, remove --enable-fortran
Configuration fails:
CMake Error at config/cmake/HDF5UseFortran.cmake:171 (list):
list index: 2 out of range (-2, 1)
Actual failure:
/usr/bin/flang-new -O3 CMakeFiles/cmTC_b4676.dir/testFortranCompiler1.f90.o -o cmTC_b4676 -lm -ldl
/usr/bin/ld: CMakeFiles/cmTC_b4676.dir/testFortranCompiler1.f90.o: in function `_QQmain':
FIRModule:(.text+0x56): undefined reference to `_QMiso_fortran_envECinteger_kinds'
/usr/bin/ld: FIRModule:(.text+0x185): undefined reference to `_QMiso_fortran_envECinteger_kinds'
/usr/bin/ld: FIRModule:(.text+0x3fa): undefined reference to `_QMiso_fortran_envECreal_kinds'
/usr/bin/ld: FIRModule:(.text+0x534): undefined reference to `_QMiso_fortran_envECreal_kinds'
/usr/bin/ld: FIRModule:(.text+0x5ca): undefined reference to `_QMiso_fortran_envECreal_kinds'
/usr/bin/ld: FIRModule:(.text+0x660): undefined reference to `_QMiso_fortran_envECreal_kinds'
/usr/bin/ld: FIRModule:(.text+0x6f9): undefined reference to `_QMiso_fortran_envECreal_kinds'
/usr/bin/ld: FIRModule:(.text+0x83d): undefined reference to `_QMiso_fortran_envEClogical_kinds'
/usr/bin/ld: FIRModule:(.text+0x96f): undefined reference to `_QMiso_fortran_envEClogical_kinds'
flang-new: error: linker command failed with exit code 1 (use -v to see invocation)