v1.1.3

• fixed error resulting from incorrect GFF files produced by Prodigal on FASTA files with Windows style line endings
• replaced usage of normed keyword with density as required for Matplotlib >= 3.2.0

v1.1.2

• removed erroneous error message when setting root to CheckM reference data
• fixed infinit loop issue when trying to install CheckM reference data to directory without write permission

v1.1.1

• fixes a few legacy Python 2 syntax issues (thanks to Sebastian Jaenicke!)

v1.1.0

• migration to Python 3
• massive thanks to baudrly, vinisalazar, and asafpr for initial Python 2 to 3 porting
• bug in ssu_finder fixed that on rare occasions caused a SSU sequence to be reported more than once
• now using i-Evalue to break ties in the rare cases when hits to a target sequence have the exact same full E-value; this makes the code more deterministic
• improvements to information reported in marker_plot
• fixed CLI issue with outliers method

v1.0.18

• fix to command-line interface of bin_qa_plot (thanks to Finesim97 for PR)

v1.0.17

• fixed bug with CLI of plotting methods introduced in 1.0.16

v1.0.16

• made ~/.checkm the default directory for CheckM reference data
• checkm data setRoot is no longer interactive and the directory must be given on the command line

v1.0.15

• fixed CheckM data setRoot command to work from command line (thanks to cbt for PR)
• added logging to files
• improved reporting of CheckM results to include timestamp
• removed "--force-overwrite" option and now allow output directories to already exist

v1.0.13

• Failed commands now exit with error code 1
• Added "--force-overwrite" option

v1.0.12

• fixed issue with missing bVerbose parameter causing CheckM to fail on some systems