Releases · DynaSim/DynaSim

Major additions with this version include:

new tutorials and example models to help users get started with starting new projects
extended DynaSim compatibility through MATLAB 2021
minor fixes and cosmetic improvements

What's Changed

Iss378 analyze by @erik-roberts in #383
plot2svg: bar plot fix for arbitrary bar separation by @kupiqu in #384
Iss385 posthoc results by @erik-roberts in #387
iss #389 initial fix by @erik-roberts in #390
Iss378 analyze by @erik-roberts in #392
iss #393 done by @erik-roberts in #394
plot2svg: fixed a figureSize issue by @kupiqu in #401
fix iss #396 by @erik-roberts in #403
remove try clause since not needed by @erik-roberts in #404
fix iss #405 by @erik-roberts in #406
Iss407 by @erik-roberts in #408
fix #397 bug dsSim with no result save by @erik-roberts in #409
fix #397 bug dsSim with no result save by @erik-roberts in #410
iss #411 dsStandardizeModifications.m by @erik-roberts in #412
close #413 by @erik-roberts in #414
fix iss #415 dsPlot time_lim by @erik-roberts in #416
fix iss #417 by @erik-roberts in #418
Iss419 by @erik-roberts in #421
Iss419 by @erik-roberts in #425
iss #431 mex path ~ bug by @erik-roberts in #433
iss #432 initial conditions in vary and param by @erik-roberts in #434
fix rng_wrapper for Octave compatibility by @kupiqu in #435
making tight_subplot2.m Octave compatible by @kupiqu in #436
fix #439 by @erik-roberts in #440
fix #441 by @erik-roberts in #442
fix #398 by @erik-roberts in #443
added ability to specify pops, cons, and mechs in equation strings by @jsherfey in #451
Revert "fix #398" by @kupiqu in #452
attempt to fix #437 by @kupiqu in #453
Fix #398 for real this time by @asoplata in #459
Iss465 matlab version by @asoplata in #466
plot2svg: added scatter plot and colorbar support in Matlab >2014a by @kupiqu in #476
plot2svg: fixed a bug not respecting figure's size by @kupiqu in #480
plot2svg: exist cannot be used for struct fields, using isfield instead by @kupiqu in #483
Iss93 gv by @erik-roberts in #487
fix for issue #454 (LIF model error) by @kupiqu in #503
Change default plot to PNG format, Resolve #460 by @asoplata in #515
Add workaround for dsPlot2 spike monitor issue by @asoplata in #535
Fix netconNearestNeighbors bug by @asoplata in #536
dsAnalyze: commenting out '& isfield(result, 'time')' on line 893. by @benpolletta in #534
plot2svg update by @kupiqu in #539
plot2svg: fix 3d plots from octave by @kupiqu in #540
workaround for issue #546 by @kupiqu in #547
always inform the octave user when internally setting mex_flag to 0 by @kupiqu in #549
fixed a bug in UIverlessthan.m by @kupiqu in #558
from unmaintained plot2svg to maintained fig2svg by @kupiqu in #560
defining sim_id in the parent function as requested by Matlab2019b by @kupiqu in #578
RNG fixes by @kupiqu in #579
Adding access to all state variables, not just the first by @kupiqu in #580
Fix for stvar lines not being excluded by @kupiqu in #581
added a flag for X_stvar_# aliases by @kupiqu in #582
Fix for issue #550 by @kupiqu in #584
defining sim in dsSimulate to avoid triggering errors in nested funct… by @kupiqu in #586
cosmetic change by @kupiqu in #587
Improve recursiveness in dsPropagateFunctions by @kupiqu in #588
Allowing refering to parent function instead of state variable by @kupiqu in #589
allowing whitespace between function variables by @kupiqu in #590
fixing previous pull request by @kupiqu in #592
adding elseif conditionals by @kupiqu in #593
Reverting because of faulty behavior for the LIF model by @kupiqu in #594
if-elseif-else conditionals by @kupiqu in #595
allow passing parameters as column vectors by @kupiqu in #596
making this last change Octave-compatible by @kupiqu in #597
Added parameter arrays, fixed mex crash and removed repeated rng calls by @kupiqu in #598
Fix issue with fixed variables + few changes in eksr by @kupiqu in #599
List multiple connections in one connection element (e.g., (A,B)->C) by @jasonsherfey in #601
Added ability to use connections.equations field for quick mechanism … by @jasonsherfey in #603
fig2svg update by @kupiqu in #604
fig2svg update by @kupiqu in #605
fig2svg: fixed marker issues by @kupiqu in #606
more efficient reportUI function by @kupiqu in #609
more efficient reportUI function by @kupiqu in #610
remove fig2svg (unmaintained) by @kupiqu in #612
remove plot2svg (unmaintained) by @kupiqu in #613
Dev by @jasonsherfey in #624
eliminate unnecessary catch by @jsherfey in #625
update dev by @jsherfey in #626
Dev - fixed LIF indexing by @jsherfey in #627
fix issue #399 by @kupiqu in #636
fix issue #637 by @kupiqu in #638
Fixed nonexistent linker reference and variable monitor by @jsherfey in #640
fixes #641 by @kupiqu in #642
cleanup by @kupiqu in #643
Fixes #490 by @kupiqu in #644
allow monitoring linkers by @sardid in #646
fixed lhs regexp's by @kupiqu in #647
implement simLog and set to 1 by default by @kupiqu in #648
Multiple changes by @kupiqu in #649
trigger an error if mechanism name is nowhere to be found by @sardid in #650
one solve file to rule them all (time difference for 1D populations seems to be residual) by @kupiqu in #651
more beautiful solve files and other cosmetic changes by @kupiqu in #652
automatic CRLF to LF replacement by @kupiqu in #653
DynaSim GUI restyling 1 and GNU Octave compatible by @kupiqu in #654
load the statistics package for DynaSim GUI to run in Octave, if not … by @kupiqu in #655
adding an async_flag to the DynaSim GUI by @kupiqu in #656
Added unbiased competition model and live script by @smrqz in #658
Live script tutorial for network resonance by @jsherfey in #660
added oscillatory inputs and instantaneous FRs plots by @smrqz in #661
fixed broken links and other minor changes by @smrqz in #662
Live script tutorials improvements and DynaSim fix for issue #664 by @smrqz in https://github.com...