v0.9.0

• Use the latest Bifrost version (1.2.1) which is faster and more memory-efficient, enables Bifrost indexes and compressed GFA output, faster read IO, etc.
• Enable compressed output with -G
• Allow input and output long read dataset with maximum base quality >40 with -Q
• Fix a major issue with graph vertices that could have insufficient or no short read coverage due to subsampling resulting in no correction
• Enable a couple more advanced/dev arguments in CLI
• Minor bug fixes

GCC version minimum requirement changes to 5.1 (from 4.8).

v0.7.6.3

Update to latest Bifrost:

• Major bugfix with single-threaded graph construction
• Minor bugfixes

v0.7.6.2

• Much faster and lightweight graph construction with Bifrost 1.0.6
• Replaces XXH with Wyhash

v0.7.5

• New color selection algorithm for paths to traverse
• New scoring method for paths to traverse
• 2x speed improvement overall
• Fix issue with high coverage threshold in the SNP candidate detection algorithm
• Experimental phasing method in the second correction round

v0.7

• Fix numerous issues introduced in v0.6, mostly in the inexact k-mer search and color writing to disk
• Detection of short cycles in the graph for TR candidates
• Speed improvements

0.1

First release version of Ratatosk.