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Rust + SIMD
🦀
Rust + SIMD
328 followers · 58 following

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Achievement: YOLOAchievement: Starstruckx3Achievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
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Achievements

Achievement: YOLOAchievement: Starstruckx3Achievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor
BetaSend feedback

Organizations

@OpenMined @haosulab @pairwise-alignment
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Daniel-Liu-c0deb0t/README.md

Greetings, curious internet dweller! 👋

This is the home of most of my code. Take a look around--something may catch your eye!

If you are extraordinarily bold and curious, check out this cool project that has been piquing my interest recently.

Pinned

  1. uwu uwu Public

    fastest text uwuifier in the west

    Rust 1.3k 41

  2. block-aligner block-aligner Public

    SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

    Jupyter Notebook 118 6

  3. google/best google/best Public

    Bam Error Stats Tool (best): analysis of error types in aligned reads.

    Rust 121 7

  4. triple_accel triple_accel Public

    Rust edit distance routines accelerated using SIMD. Supports fast Hamming, Levenshtein, restricted Damerau-Levenshtein, etc. distance calculations and string search.

    Rust 93 10

  5. UMICollapse UMICollapse Public

    Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.

    Java 52 8

  6. cute-nucleotides cute-nucleotides Public

    Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.

    Rust 109 4