Skip to content

Commit

Permalink
Merge pull request #301 from CliMA/ncc/oceananigans-0.78.2
Browse files Browse the repository at this point in the history
Update Oceananigans v0.78.2
  • Loading branch information
navidcy committed Nov 12, 2022
2 parents d5674df + dde9d4c commit 456a6dd
Show file tree
Hide file tree
Showing 4 changed files with 129 additions and 117 deletions.
112 changes: 59 additions & 53 deletions Manifest.toml
Expand Up @@ -2,7 +2,7 @@

julia_version = "1.8.2"
manifest_format = "2.0"
project_hash = "12fa6bebc927072f225d9f097f620a08b879e078"
project_hash = "5c77924c867816a1a286b123d311dd430efedebb"

[[deps.AMD]]
deps = ["Libdl", "LinearAlgebra", "SparseArrays", "Test"]
Expand Down Expand Up @@ -57,9 +57,9 @@ version = "6.0.23"

[[deps.ArrayInterfaceCore]]
deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
git-tree-sha1 = "732cddf5c7a3d4e7d4829012042221a724a30674"
git-tree-sha1 = "c46fb7dd1d8ca1d213ba25848a5ec4e47a1a1b08"
uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2"
version = "0.1.24"
version = "0.1.26"

[[deps.Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
Expand All @@ -75,20 +75,20 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"

[[deps.BenchmarkTools]]
deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"]
git-tree-sha1 = "4c10eee4af024676200bc7752e536f858c6b8f93"
git-tree-sha1 = "d9a9701b899b30332bbcb3e1679c41cce81fb0e8"
uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
version = "1.3.1"
version = "1.3.2"

[[deps.BitFlags]]
git-tree-sha1 = "84259bb6172806304b9101094a7cc4bc6f56dbc6"
git-tree-sha1 = "629c6e4a7be8f427d268cebef2a5e3de6c50d462"
uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
version = "0.1.5"
version = "0.1.6"

[[deps.BlockDiagonals]]
deps = ["ChainRulesCore", "FillArrays", "FiniteDifferences", "LinearAlgebra"]
git-tree-sha1 = "c70a29b23e304581a020c42f66d1d9d0ee5e40a9"
git-tree-sha1 = "2826da72eacf85bf035d08619946803e18af42d0"
uuid = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0"
version = "0.1.37"
version = "0.1.39"

[[deps.Bzip2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -126,9 +126,9 @@ uuid = "e9e359dc-d701-5aa8-82ae-09bbf812ea83"
version = "10.0.130+3"

[[deps.Cassette]]
git-tree-sha1 = "063b2e77c5537a548c5bf2f44161f1d3e1ab3227"
git-tree-sha1 = "a70f220ea09ec61401745ff338f8fb340420165c"
uuid = "7057c7e9-c182-5462-911a-8362d720325c"
version = "0.3.10"
version = "0.3.11"

[[deps.ChainRulesCore]]
deps = ["Compat", "LinearAlgebra", "SparseArrays"]
Expand Down Expand Up @@ -200,9 +200,9 @@ uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
version = "0.2.0"

[[deps.DataAPI]]
git-tree-sha1 = "46d2680e618f8abd007bce0c3026cb0c4a8f2032"
git-tree-sha1 = "e08915633fcb3ea83bf9d6126292e5bc5c739922"
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
version = "1.12.0"
version = "1.13.0"

[[deps.DataDeps]]
deps = ["HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"]
Expand Down Expand Up @@ -239,9 +239,9 @@ version = "1.1.0"

[[deps.DiffRules]]
deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"]
git-tree-sha1 = "8b7a4d23e22f5d44883671da70865ca98f2ebf9d"
git-tree-sha1 = "9a95659c283c9018ea99e017aa9e13b7e89fadd2"
uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
version = "1.12.0"
version = "1.12.1"

[[deps.Distances]]
deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"]
Expand All @@ -255,9 +255,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"

[[deps.Distributions]]
deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"]
git-tree-sha1 = "04db820ebcfc1e053bd8cbb8d8bccf0ff3ead3f7"
git-tree-sha1 = "bee795cdeabc7601776abbd6b9aac2ca62429966"
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
version = "0.25.76"
version = "0.25.77"

[[deps.DocStringExtensions]]
deps = ["LibGit2"]
Expand Down Expand Up @@ -333,9 +333,9 @@ version = "0.13.5"

[[deps.FiniteDiff]]
deps = ["ArrayInterfaceCore", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"]
git-tree-sha1 = "5a2cff9b6b77b33b89f3d97a4d367747adce647e"
git-tree-sha1 = "bb61d9e5085784fe453f70c97b23964c5bf36942"
uuid = "6a86dc24-6348-571c-b903-95158fe2bd41"
version = "2.15.0"
version = "2.16.0"

[[deps.FiniteDifferences]]
deps = ["ChainRulesCore", "LinearAlgebra", "Printf", "Random", "Richardson", "SparseArrays", "StaticArrays"]
Expand All @@ -345,9 +345,9 @@ version = "0.12.25"

[[deps.ForwardDiff]]
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"]
git-tree-sha1 = "187198a4ed8ccd7b5d99c41b69c679269ea2b2d4"
git-tree-sha1 = "10fa12fe96e4d76acfa738f4df2126589a67374f"
uuid = "f6369f11-7733-5829-9624-2563aa707210"
version = "0.10.32"
version = "0.10.33"

[[deps.Future]]
deps = ["Random"]
Expand All @@ -367,9 +367,9 @@ version = "0.1.2"

[[deps.GPUCompiler]]
deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"]
git-tree-sha1 = "323949b0bbdf38c93d2ea1f7d3e68ff163c3f081"
git-tree-sha1 = "76f70a337a153c1632104af19d29023dbb6f30dd"
uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
version = "0.16.5"
version = "0.16.6"

[[deps.GaussianProcesses]]
deps = ["Distances", "Distributions", "ElasticArrays", "ElasticPDMats", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra", "Optim", "PDMats", "Printf", "ProgressMeter", "Random", "RecipesBase", "ScikitLearnBase", "SpecialFunctions", "StaticArrays", "Statistics", "StatsFuns"]
Expand All @@ -390,9 +390,9 @@ version = "1.12.2+2"

[[deps.HTTP]]
deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
git-tree-sha1 = "a97d47758e933cd5fe5ea181d178936a9fc60427"
git-tree-sha1 = "8c7e6b82abd41364b8ffe40ffc63b33e590c8722"
uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
version = "1.5.1"
version = "1.5.3"

[[deps.IfElse]]
git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
Expand All @@ -401,9 +401,9 @@ version = "0.1.1"

[[deps.IncompleteLU]]
deps = ["LinearAlgebra", "SparseArrays"]
git-tree-sha1 = "a22b92ffedeb499383720dfedcd473deb9608b62"
git-tree-sha1 = "6c676e79f98abb6d33fa28122cad099f1e464afe"
uuid = "40713840-3770-5561-ab4c-a76e7d0d7895"
version = "0.2.0"
version = "0.2.1"

[[deps.IniFile]]
git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625"
Expand Down Expand Up @@ -444,9 +444,9 @@ version = "1.0.0"

[[deps.JLD2]]
deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "TranscodingStreams", "UUIDs"]
git-tree-sha1 = "1c3ff7416cb727ebf4bab0491a56a296d7b8cf1d"
git-tree-sha1 = "acb4be8227e1f3ff890d564d55dcde9cf92e4337"
uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
version = "0.4.25"
version = "0.4.26"

[[deps.JLLWrappers]]
deps = ["Preferences"]
Expand Down Expand Up @@ -555,9 +555,9 @@ version = "2022.2.0+0"

[[deps.MPI]]
deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "Requires", "Serialization", "Sockets"]
git-tree-sha1 = "067fd6ff731c8b414b5c1f3de723d8aed3b4198f"
git-tree-sha1 = "649b1c447a6c737d3bec80d0b72ccb7aba82310d"
uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195"
version = "0.20.3"
version = "0.20.4"

[[deps.MPICH_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "Pkg", "TOML"]
Expand Down Expand Up @@ -631,9 +631,9 @@ version = "1.0.5"

[[deps.NCDatasets]]
deps = ["CFTime", "DataStructures", "Dates", "NetCDF_jll", "NetworkOptions", "Printf"]
git-tree-sha1 = "1818d54a489492517841c2cb87475ba20918264c"
git-tree-sha1 = "8d5cd8ff530228bf172f7d4e91d9ae9e8b8e8ad3"
uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab"
version = "0.12.8"
version = "0.12.9"

[[deps.NLSolversBase]]
deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
Expand All @@ -659,9 +659,9 @@ version = "1.2.0"

[[deps.Oceananigans]]
deps = ["AMGX", "Adapt", "AlgebraicMultigrid", "CUDA", "CUDAKernels", "Crayons", "CubedSphere", "Dates", "DocStringExtensions", "FFTW", "Glob", "IncompleteLU", "InteractiveUtils", "IterativeSolvers", "JLD2", "KernelAbstractions", "LinearAlgebra", "Logging", "MPI", "NCDatasets", "OffsetArrays", "OrderedCollections", "PencilArrays", "PencilFFTs", "Pkg", "Printf", "Random", "Rotations", "SeawaterPolynomials", "SparseArrays", "Statistics", "StructArrays", "Tullio"]
git-tree-sha1 = "d791b9d1e6d32d916e6bdcbb5984c29bfa6ed7d6"
git-tree-sha1 = "569005a95a472facb8e0bc35d4c3b29308eb82e7"
uuid = "9e8cae18-63c1-5223-a75c-80ca9d6e9a09"
version = "0.78.1"
version = "0.78.2"

[[deps.OffsetArrays]]
deps = ["Adapt"]
Expand Down Expand Up @@ -693,15 +693,15 @@ version = "4.1.3+3"

[[deps.OpenSSL]]
deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
git-tree-sha1 = "3c3c4a401d267b04942545b1e964a20279587fd7"
git-tree-sha1 = "5628f092c6186a80484bfefdf89ff64efdaec552"
uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c"
version = "1.3.0"
version = "1.3.1"

[[deps.OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "e60321e3f2616584ff98f0a4f18d98ae6f89bbb3"
git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "1.1.17+0"
version = "1.1.19+0"

[[deps.OpenSpecFun_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
Expand Down Expand Up @@ -733,10 +733,10 @@ uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a"
version = "0.12.3"

[[deps.Parsers]]
deps = ["Dates"]
git-tree-sha1 = "6c01a9b494f6d2a9fc180a08b182fcb06f0958a0"
deps = ["Dates", "SnoopPrecompile"]
git-tree-sha1 = "cceb0257b662528ecdf0b4b4302eb00e767b38e7"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "2.4.2"
version = "2.5.0"

[[deps.PencilArrays]]
deps = ["Adapt", "ArrayInterface", "JSON3", "LinearAlgebra", "MPI", "OffsetArrays", "Random", "Reexport", "Requires", "StaticArrays", "StaticPermutations", "Strided", "TimerOutputs", "VersionParsing"]
Expand Down Expand Up @@ -861,22 +861,28 @@ uuid = "6038ab10-8711-5258-84ad-4b1120ba62dc"
version = "1.3.3"

[[deps.SCS]]
deps = ["MathOptInterface", "Requires", "SCS_GPU_jll", "SCS_jll", "SparseArrays"]
git-tree-sha1 = "8d908b7c81e199ee92d17b6192849e8c43d2f31d"
deps = ["MathOptInterface", "Requires", "SCS_GPU_jll", "SCS_MKL_jll", "SCS_jll", "SparseArrays"]
git-tree-sha1 = "2e3ca40559ecaed6ffe9410b06aabcc1e087215d"
uuid = "c946c3f1-0d1f-5ce8-9dea-7daa1f7e2d13"
version = "1.1.2"
version = "1.1.3"

[[deps.SCS_GPU_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "Pkg"]
git-tree-sha1 = "f912271ecccb00acaddfab2943e9b33d5ec36d3b"
git-tree-sha1 = "2b3799ff650d0530a19c2a3bd4b158a4f3e4581a"
uuid = "af6e375f-46ec-5fa0-b791-491b0dfa44a4"
version = "3.2.0+0"
version = "3.2.1+0"

[[deps.SCS_MKL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "MKL_jll", "Pkg"]
git-tree-sha1 = "a4923177e60fdb7f802e1a42a73d0af400eea163"
uuid = "3f2553a9-4106-52be-b7dd-865123654657"
version = "3.2.2+0"

[[deps.SCS_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "Pkg"]
git-tree-sha1 = "ba5c0d3b23220d3598d2877b4cf913e3fcf8add3"
git-tree-sha1 = "5544538910047c7522908cf87bb0c884a7afff92"
uuid = "f4f2fc5b-1d94-523c-97ea-2ab488bedf4b"
version = "3.2.0+0"
version = "3.2.1+0"

[[deps.SHA]]
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
Expand Down Expand Up @@ -933,9 +939,9 @@ version = "2.1.7"

[[deps.Static]]
deps = ["IfElse"]
git-tree-sha1 = "de4f0a4f049a4c87e4948c04acff37baf1be01a6"
git-tree-sha1 = "03170c1e8a94732c1d835ce4c5b904b4b52cba1c"
uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
version = "0.7.7"
version = "0.7.8"

[[deps.StaticArrays]]
deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"]
Expand Down Expand Up @@ -1036,9 +1042,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

[[deps.TimerOutputs]]
deps = ["ExprTools", "Printf"]
git-tree-sha1 = "9dfcb767e17b0849d6aaf85997c98a5aea292513"
git-tree-sha1 = "f2fd3f288dfc6f507b0c3a2eb3bac009251e548b"
uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
version = "0.5.21"
version = "0.5.22"

[[deps.TranscodingStreams]]
deps = ["Random", "Test"]
Expand Down
4 changes: 2 additions & 2 deletions Project.toml
Expand Up @@ -2,7 +2,7 @@ name = "ParameterEstimocean"
uuid = "eca81dc5-87a6-4430-aec8-c76695404a43"
license = "MIT"
authors = ["Climate Modeling Alliance and contributors"]
version = "0.14.0"
version = "0.14.1"

[deps]
BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0"
Expand Down Expand Up @@ -37,7 +37,7 @@ GaussianProcesses = "0.12"
JLD2 = "0.4"
LineSearches = "7"
MPI = "0.20"
Oceananigans = "0.78.1"
Oceananigans = "0.78.2"
OffsetArrays = "1"
OrderedCollections = "1"
ProgressBars = "1"
Expand Down

2 comments on commit 456a6dd

@navidcy
Copy link
Collaborator Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@JuliaRegistrator
Copy link

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Registration pull request created: JuliaRegistries/General/72116

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if the Julia TagBot GitHub Action is installed, or can be done manually through the github interface, or via:

git tag -a v0.14.1 -m "<description of version>" 456a6dd0c7e7b9b2e3f7f4253b1202095e29510c
git push origin v0.14.1

Please sign in to comment.