update Oceananigans v0.78.2

Manifest.toml

@@ -2,7 +2,7 @@
 
 julia_version = "1.8.2"
 manifest_format = "2.0"
-project_hash = "12fa6bebc927072f225d9f097f620a08b879e078"
+project_hash = "5c77924c867816a1a286b123d311dd430efedebb"
 
 [[deps.AMD]]
 deps = ["Libdl", "LinearAlgebra", "SparseArrays", "Test"]
@@ -57,9 +57,9 @@ version = "6.0.23"
 
 [[deps.ArrayInterfaceCore]]
 deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"]
-git-tree-sha1 = "732cddf5c7a3d4e7d4829012042221a724a30674"
+git-tree-sha1 = "c46fb7dd1d8ca1d213ba25848a5ec4e47a1a1b08"
 uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2"
-version = "0.1.24"
+version = "0.1.26"
 
 [[deps.Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
@@ -75,20 +75,20 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
 [[deps.BenchmarkTools]]
 deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"]
-git-tree-sha1 = "4c10eee4af024676200bc7752e536f858c6b8f93"
+git-tree-sha1 = "d9a9701b899b30332bbcb3e1679c41cce81fb0e8"
 uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
-version = "1.3.1"
+version = "1.3.2"
 
 [[deps.BitFlags]]
-git-tree-sha1 = "84259bb6172806304b9101094a7cc4bc6f56dbc6"
+git-tree-sha1 = "629c6e4a7be8f427d268cebef2a5e3de6c50d462"
 uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
-version = "0.1.5"
+version = "0.1.6"
 
 [[deps.BlockDiagonals]]
 deps = ["ChainRulesCore", "FillArrays", "FiniteDifferences", "LinearAlgebra"]
-git-tree-sha1 = "c70a29b23e304581a020c42f66d1d9d0ee5e40a9"
+git-tree-sha1 = "2826da72eacf85bf035d08619946803e18af42d0"
 uuid = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0"
-version = "0.1.37"
+version = "0.1.39"
 
 [[deps.Bzip2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -126,9 +126,9 @@ uuid = "e9e359dc-d701-5aa8-82ae-09bbf812ea83"
 version = "10.0.130+3"
 
 [[deps.Cassette]]
-git-tree-sha1 = "063b2e77c5537a548c5bf2f44161f1d3e1ab3227"
+git-tree-sha1 = "a70f220ea09ec61401745ff338f8fb340420165c"
 uuid = "7057c7e9-c182-5462-911a-8362d720325c"
-version = "0.3.10"
+version = "0.3.11"
 
 [[deps.ChainRulesCore]]
 deps = ["Compat", "LinearAlgebra", "SparseArrays"]
@@ -200,9 +200,9 @@ uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb"
 version = "0.2.0"
 
 [[deps.DataAPI]]
-git-tree-sha1 = "46d2680e618f8abd007bce0c3026cb0c4a8f2032"
+git-tree-sha1 = "e08915633fcb3ea83bf9d6126292e5bc5c739922"
 uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a"
-version = "1.12.0"
+version = "1.13.0"
 
 [[deps.DataDeps]]
 deps = ["HTTP", "Libdl", "Reexport", "SHA", "p7zip_jll"]
@@ -239,9 +239,9 @@ version = "1.1.0"
 
 [[deps.DiffRules]]
 deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"]
-git-tree-sha1 = "8b7a4d23e22f5d44883671da70865ca98f2ebf9d"
+git-tree-sha1 = "9a95659c283c9018ea99e017aa9e13b7e89fadd2"
 uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
-version = "1.12.0"
+version = "1.12.1"
 
 [[deps.Distances]]
 deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"]
@@ -255,9 +255,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[deps.Distributions]]
 deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"]
-git-tree-sha1 = "04db820ebcfc1e053bd8cbb8d8bccf0ff3ead3f7"
+git-tree-sha1 = "bee795cdeabc7601776abbd6b9aac2ca62429966"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.25.76"
+version = "0.25.77"
 
 [[deps.DocStringExtensions]]
 deps = ["LibGit2"]
@@ -333,9 +333,9 @@ version = "0.13.5"
 
 [[deps.FiniteDiff]]
 deps = ["ArrayInterfaceCore", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"]
-git-tree-sha1 = "5a2cff9b6b77b33b89f3d97a4d367747adce647e"
+git-tree-sha1 = "bb61d9e5085784fe453f70c97b23964c5bf36942"
 uuid = "6a86dc24-6348-571c-b903-95158fe2bd41"
-version = "2.15.0"
+version = "2.16.0"
 
 [[deps.FiniteDifferences]]
 deps = ["ChainRulesCore", "LinearAlgebra", "Printf", "Random", "Richardson", "SparseArrays", "StaticArrays"]
@@ -345,9 +345,9 @@ version = "0.12.25"
 
 [[deps.ForwardDiff]]
 deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"]
-git-tree-sha1 = "187198a4ed8ccd7b5d99c41b69c679269ea2b2d4"
+git-tree-sha1 = "10fa12fe96e4d76acfa738f4df2126589a67374f"
 uuid = "f6369f11-7733-5829-9624-2563aa707210"
-version = "0.10.32"
+version = "0.10.33"
 
 [[deps.Future]]
 deps = ["Random"]
@@ -367,9 +367,9 @@ version = "0.1.2"
 
 [[deps.GPUCompiler]]
 deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"]
-git-tree-sha1 = "323949b0bbdf38c93d2ea1f7d3e68ff163c3f081"
+git-tree-sha1 = "76f70a337a153c1632104af19d29023dbb6f30dd"
 uuid = "61eb1bfa-7361-4325-ad38-22787b887f55"
-version = "0.16.5"
+version = "0.16.6"
 
 [[deps.GaussianProcesses]]
 deps = ["Distances", "Distributions", "ElasticArrays", "ElasticPDMats", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra", "Optim", "PDMats", "Printf", "ProgressMeter", "Random", "RecipesBase", "ScikitLearnBase", "SpecialFunctions", "StaticArrays", "Statistics", "StatsFuns"]
@@ -390,9 +390,9 @@ version = "1.12.2+2"
 
 [[deps.HTTP]]
 deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
-git-tree-sha1 = "a97d47758e933cd5fe5ea181d178936a9fc60427"
+git-tree-sha1 = "8c7e6b82abd41364b8ffe40ffc63b33e590c8722"
 uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
-version = "1.5.1"
+version = "1.5.3"
 
 [[deps.IfElse]]
 git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1"
@@ -401,9 +401,9 @@ version = "0.1.1"
 
 [[deps.IncompleteLU]]
 deps = ["LinearAlgebra", "SparseArrays"]
-git-tree-sha1 = "a22b92ffedeb499383720dfedcd473deb9608b62"
+git-tree-sha1 = "6c676e79f98abb6d33fa28122cad099f1e464afe"
 uuid = "40713840-3770-5561-ab4c-a76e7d0d7895"
-version = "0.2.0"
+version = "0.2.1"
 
 [[deps.IniFile]]
 git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625"
@@ -444,9 +444,9 @@ version = "1.0.0"
 
 [[deps.JLD2]]
 deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "TranscodingStreams", "UUIDs"]
-git-tree-sha1 = "1c3ff7416cb727ebf4bab0491a56a296d7b8cf1d"
+git-tree-sha1 = "acb4be8227e1f3ff890d564d55dcde9cf92e4337"
 uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
-version = "0.4.25"
+version = "0.4.26"
 
 [[deps.JLLWrappers]]
 deps = ["Preferences"]
@@ -555,9 +555,9 @@ version = "2022.2.0+0"
 
 [[deps.MPI]]
 deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "Requires", "Serialization", "Sockets"]
-git-tree-sha1 = "067fd6ff731c8b414b5c1f3de723d8aed3b4198f"
+git-tree-sha1 = "649b1c447a6c737d3bec80d0b72ccb7aba82310d"
 uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195"
-version = "0.20.3"
+version = "0.20.4"
 
 [[deps.MPICH_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "Pkg", "TOML"]
@@ -631,9 +631,9 @@ version = "1.0.5"
 
 [[deps.NCDatasets]]
 deps = ["CFTime", "DataStructures", "Dates", "NetCDF_jll", "NetworkOptions", "Printf"]
-git-tree-sha1 = "1818d54a489492517841c2cb87475ba20918264c"
+git-tree-sha1 = "8d5cd8ff530228bf172f7d4e91d9ae9e8b8e8ad3"
 uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab"
-version = "0.12.8"
+version = "0.12.9"
 
 [[deps.NLSolversBase]]
 deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
@@ -659,9 +659,9 @@ version = "1.2.0"
 
 [[deps.Oceananigans]]
 deps = ["AMGX", "Adapt", "AlgebraicMultigrid", "CUDA", "CUDAKernels", "Crayons", "CubedSphere", "Dates", "DocStringExtensions", "FFTW", "Glob", "IncompleteLU", "InteractiveUtils", "IterativeSolvers", "JLD2", "KernelAbstractions", "LinearAlgebra", "Logging", "MPI", "NCDatasets", "OffsetArrays", "OrderedCollections", "PencilArrays", "PencilFFTs", "Pkg", "Printf", "Random", "Rotations", "SeawaterPolynomials", "SparseArrays", "Statistics", "StructArrays", "Tullio"]
-git-tree-sha1 = "d791b9d1e6d32d916e6bdcbb5984c29bfa6ed7d6"
+git-tree-sha1 = "569005a95a472facb8e0bc35d4c3b29308eb82e7"
 uuid = "9e8cae18-63c1-5223-a75c-80ca9d6e9a09"
-version = "0.78.1"
+version = "0.78.2"
 
 [[deps.OffsetArrays]]
 deps = ["Adapt"]
@@ -693,15 +693,15 @@ version = "4.1.3+3"
 
 [[deps.OpenSSL]]
 deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"]
-git-tree-sha1 = "3c3c4a401d267b04942545b1e964a20279587fd7"
+git-tree-sha1 = "5628f092c6186a80484bfefdf89ff64efdaec552"
 uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c"
-version = "1.3.0"
+version = "1.3.1"
 
 [[deps.OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "e60321e3f2616584ff98f0a4f18d98ae6f89bbb3"
+git-tree-sha1 = "f6e9dba33f9f2c44e08a020b0caf6903be540004"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "1.1.17+0"
+version = "1.1.19+0"
 
 [[deps.OpenSpecFun_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"]
@@ -733,10 +733,10 @@ uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a"
 version = "0.12.3"
 
 [[deps.Parsers]]
-deps = ["Dates"]
-git-tree-sha1 = "6c01a9b494f6d2a9fc180a08b182fcb06f0958a0"
+deps = ["Dates", "SnoopPrecompile"]
+git-tree-sha1 = "cceb0257b662528ecdf0b4b4302eb00e767b38e7"
 uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
-version = "2.4.2"
+version = "2.5.0"
 
 [[deps.PencilArrays]]
 deps = ["Adapt", "ArrayInterface", "JSON3", "LinearAlgebra", "MPI", "OffsetArrays", "Random", "Reexport", "Requires", "StaticArrays", "StaticPermutations", "Strided", "TimerOutputs", "VersionParsing"]
@@ -861,22 +861,28 @@ uuid = "6038ab10-8711-5258-84ad-4b1120ba62dc"
 version = "1.3.3"
 
 [[deps.SCS]]
-deps = ["MathOptInterface", "Requires", "SCS_GPU_jll", "SCS_jll", "SparseArrays"]
-git-tree-sha1 = "8d908b7c81e199ee92d17b6192849e8c43d2f31d"
+deps = ["MathOptInterface", "Requires", "SCS_GPU_jll", "SCS_MKL_jll", "SCS_jll", "SparseArrays"]
+git-tree-sha1 = "2e3ca40559ecaed6ffe9410b06aabcc1e087215d"
 uuid = "c946c3f1-0d1f-5ce8-9dea-7daa1f7e2d13"
-version = "1.1.2"
+version = "1.1.3"
 
 [[deps.SCS_GPU_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "Pkg"]
-git-tree-sha1 = "f912271ecccb00acaddfab2943e9b33d5ec36d3b"
+git-tree-sha1 = "2b3799ff650d0530a19c2a3bd4b158a4f3e4581a"
 uuid = "af6e375f-46ec-5fa0-b791-491b0dfa44a4"
-version = "3.2.0+0"
+version = "3.2.1+0"
+
+[[deps.SCS_MKL_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "MKL_jll", "Pkg"]
+git-tree-sha1 = "a4923177e60fdb7f802e1a42a73d0af400eea163"
+uuid = "3f2553a9-4106-52be-b7dd-865123654657"
+version = "3.2.2+0"
 
 [[deps.SCS_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "Pkg"]
-git-tree-sha1 = "ba5c0d3b23220d3598d2877b4cf913e3fcf8add3"
+git-tree-sha1 = "5544538910047c7522908cf87bb0c884a7afff92"
 uuid = "f4f2fc5b-1d94-523c-97ea-2ab488bedf4b"
-version = "3.2.0+0"
+version = "3.2.1+0"
 
 [[deps.SHA]]
 uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
@@ -933,9 +939,9 @@ version = "2.1.7"
 
 [[deps.Static]]
 deps = ["IfElse"]
-git-tree-sha1 = "de4f0a4f049a4c87e4948c04acff37baf1be01a6"
+git-tree-sha1 = "03170c1e8a94732c1d835ce4c5b904b4b52cba1c"
 uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3"
-version = "0.7.7"
+version = "0.7.8"
 
 [[deps.StaticArrays]]
 deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"]
@@ -1036,9 +1042,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [[deps.TimerOutputs]]
 deps = ["ExprTools", "Printf"]
-git-tree-sha1 = "9dfcb767e17b0849d6aaf85997c98a5aea292513"
+git-tree-sha1 = "f2fd3f288dfc6f507b0c3a2eb3bac009251e548b"
 uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
-version = "0.5.21"
+version = "0.5.22"
 
 [[deps.TranscodingStreams]]
 deps = ["Random", "Test"]

Project.toml

@@ -2,7 +2,7 @@ name = "ParameterEstimocean"
 uuid = "eca81dc5-87a6-4430-aec8-c76695404a43"
 license = "MIT"
 authors = ["Climate Modeling Alliance and contributors"]
-version = "0.14.0"
+version = "0.14.1"
 
 [deps]
 BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0"
@@ -37,7 +37,7 @@ GaussianProcesses = "0.12"
 JLD2 = "0.4"
 LineSearches = "7"
 MPI = "0.20"
-Oceananigans = "0.78.1"
+Oceananigans = "0.78.2"
 OffsetArrays = "1"
 OrderedCollections = "1"
 ProgressBars = "1"