1.9.0

This is a new release of CaPTk containing many bugfixes and a few new features.

The radiomic feature extraction module notably now includes CoLlAGe features (from RadXTools) and IBSI-2 convolutional features. Furthermore, various bugfixes and enhancements have been added to better support Perfusion, DWI and other 4D imaging data.

Available binaries (download at NITRC):

Platform (x64)	Link
Windows	https://www.nitrc.org/frs/downloadlink.php/12727
Linux	https://www.nitrc.org/frs/downloadlink.php/12726

What's Changed

• updated version by @sarthakpati in #1353
• Version updated for models by @sarthakpati in #1356
• Version updated for next release by @sarthakpati in #1358
• 1359 by @sarthakpati in #1360
• Feature Extraction updates by @sarthakpati in #1362
• Direction cosine and spacing tolerance added by @sarthakpati in #1365
• addressing #1366 by @sarthakpati in #1367
• Perfusion Alignment fixes by @sarthakpati in #1363
• Plotting for perfusion alignment by @ashishsingh18 in #1370
• TrainingModule parameter changes by @AlexanderGetka-cbica in #1371
• 1369 by @sarthakpati in #1372
• added discussion section by @sarthakpati in #1381
• 1391 by @sarthakpati in #1392
• Perfusion PCA updates by @ashishsingh18 in #1389
• add codacy badge by @ashishsingh18 in #1404
• Fix #1405 by @AlexanderGetka-cbica in #1406
• Version updated and a minor FE fix by @sarthakpati in #1394
• Some dicom-related fixes by @sarthakpati in #1409
• added 1% tolerance for feature extraction by @sarthakpati in #1414
• Testing CS's PR from my fork by @sarthakpati in #1419
• Update Utilities.cxx by @chiharusako in #1418
• Try pointing NITRC upload to new location by @AlexanderGetka-cbica in #1420
• Updating links by @sarthakpati in #1426
• removing tests to ensure azure finishes builds by @sarthakpati in #1425
• Update Dockerfile to correct entrypoint by @AlexanderGetka-cbica in #1428
• Documentation updated by @sarthakpati in #1429
• DICOM read fix by @sarthakpati in #1431
• Traning module revamp and several bugfixes by @AlexanderGetka-cbica in #1442
• Documentation updates by @sarthakpati in #1445
• Minor html updates by @sarthakpati in #1448
• Perfusion Alignment, PCA and Derivatives measures by @AlexanderGetka-cbica in #1463
• Diffusion derivatives additions by @AlexanderGetka-cbica in #1454
• perfusion pca documentation update by @ashishsingh18 in #1462
• Version update for alpha_2 by @sarthakpati in #1461
• Update version to 1.9.0.Alpha by @AlexanderGetka-cbica in #1464
• added parse() to handle options advertised by makeself, added more te… by @MarkBergman-cbica in #1480
• Adding baseline IBSI2 feature extraction by @sarthakpati in #1469
• Perfusion-related fixes (PHI, PerfusionPCA, GUI/CLI) by @AlexanderGetka-cbica in #1476
• Fix diffusion derivatives by @AlexanderGetka-cbica in #1478
• COLLAGE feature additions/warnings (also a DeepMedic model version fix) by @AlexanderGetka-cbica in #1479
• More miscellaneous fixes for 1.9 by @AlexanderGetka-cbica in #1482
• 1.9.0.beta version change by @AlexanderGetka-cbica in #1485
• Update to RC instead of Beta by @AlexanderGetka-cbica in #1486
• Added IBSI2 definitions in parameter file by @sarthakpati in #1489
• Add IBSI2 GUI, fix compatibility with CaPTk by @AlexanderGetka-cbica in #1490
• [BraTSPipeline] Move brain-masked image write to Skull Stripping instead of Brain Tumor step by @AlexanderGetka-cbica in #1493
• Update to 1.9.0, also Fix ROI orientation, especially 4D by @AlexanderGetka-cbica in #1494

New Contributors

• @MarkBergman-cbica made their first contribution in #1480

Full Changelog: 1.8.1...1.9.0