Releases: CBICA/CaPTk
Releases · CBICA/CaPTk
1.9.0
This is a new release of CaPTk containing many bugfixes and a few new features.
The radiomic feature extraction module notably now includes CoLlAGe features (from RadXTools) and IBSI-2 convolutional features. Furthermore, various bugfixes and enhancements have been added to better support Perfusion, DWI and other 4D imaging data.
Available binaries (download at NITRC):
| Platform (x64) | Link |
|---|---|
| Windows | https://www.nitrc.org/frs/downloadlink.php/12727 |
| Linux | https://www.nitrc.org/frs/downloadlink.php/12726 |
What's Changed
- updated version by @sarthakpati in #1353
- Version updated for models by @sarthakpati in #1356
- Version updated for next release by @sarthakpati in #1358
- 1359 by @sarthakpati in #1360
- Feature Extraction updates by @sarthakpati in #1362
- Direction cosine and spacing tolerance added by @sarthakpati in #1365
- addressing #1366 by @sarthakpati in #1367
- Perfusion Alignment fixes by @sarthakpati in #1363
- Plotting for perfusion alignment by @ashishsingh18 in #1370
- TrainingModule parameter changes by @AlexanderGetka-cbica in #1371
- 1369 by @sarthakpati in #1372
- added discussion section by @sarthakpati in #1381
- 1391 by @sarthakpati in #1392
- Perfusion PCA updates by @ashishsingh18 in #1389
- add codacy badge by @ashishsingh18 in #1404
- Fix #1405 by @AlexanderGetka-cbica in #1406
- Version updated and a minor FE fix by @sarthakpati in #1394
- Some dicom-related fixes by @sarthakpati in #1409
- added 1% tolerance for feature extraction by @sarthakpati in #1414
- Testing CS's PR from my fork by @sarthakpati in #1419
- Update Utilities.cxx by @chiharusako in #1418
- Try pointing NITRC upload to new location by @AlexanderGetka-cbica in #1420
- Updating links by @sarthakpati in #1426
- removing tests to ensure azure finishes builds by @sarthakpati in #1425
- Update Dockerfile to correct entrypoint by @AlexanderGetka-cbica in #1428
- Documentation updated by @sarthakpati in #1429
- DICOM read fix by @sarthakpati in #1431
- Traning module revamp and several bugfixes by @AlexanderGetka-cbica in #1442
- Documentation updates by @sarthakpati in #1445
- Minor html updates by @sarthakpati in #1448
- Perfusion Alignment, PCA and Derivatives measures by @AlexanderGetka-cbica in #1463
- Diffusion derivatives additions by @AlexanderGetka-cbica in #1454
- perfusion pca documentation update by @ashishsingh18 in #1462
- Version update for alpha_2 by @sarthakpati in #1461
- Update version to 1.9.0.Alpha by @AlexanderGetka-cbica in #1464
- added parse() to handle options advertised by makeself, added more te… by @MarkBergman-cbica in #1480
- Adding baseline IBSI2 feature extraction by @sarthakpati in #1469
- Perfusion-related fixes (PHI, PerfusionPCA, GUI/CLI) by @AlexanderGetka-cbica in #1476
- Fix diffusion derivatives by @AlexanderGetka-cbica in #1478
- COLLAGE feature additions/warnings (also a DeepMedic model version fix) by @AlexanderGetka-cbica in #1479
- More miscellaneous fixes for 1.9 by @AlexanderGetka-cbica in #1482
- 1.9.0.beta version change by @AlexanderGetka-cbica in #1485
- Update to RC instead of Beta by @AlexanderGetka-cbica in #1486
- Added
IBSI2definitions in parameter file by @sarthakpati in #1489 - Add IBSI2 GUI, fix compatibility with CaPTk by @AlexanderGetka-cbica in #1490
- [BraTSPipeline] Move brain-masked image write to Skull Stripping instead of Brain Tumor step by @AlexanderGetka-cbica in #1493
- Update to 1.9.0, also Fix ROI orientation, especially 4D by @AlexanderGetka-cbica in #1494
New Contributors
- @MarkBergman-cbica made their first contribution in #1480
Full Changelog: 1.8.1...1.9.0
Contributors
sarthakpati, MarkBergman-cbica, and 3 other contributors
Assets 2
1.9.0 Release Candidate 1
This is the release candidate of CaPTk version 1.9.0, containing many bug fixes and a few new features.
Available binaries (download at NITRC):
| Platform (x64) | Link |
|---|---|
| Windows | https://www.nitrc.org/frs/downloadlink.php/12517 |
| Linux | https://www.nitrc.org/frs/downloadlink.php/12518 |
Note that macOS is now supported via Docker image and is not currently built as a standalone binary. Please pull the cbica/captk image from Docker Hub for use on Mac.
What's Changed
- updated version by @sarthakpati in #1353
- Version updated for models by @sarthakpati in #1356
- Version updated for next release by @sarthakpati in #1358
- 1359 by @sarthakpati in #1360
- Feature Extraction updates by @sarthakpati in #1362
- Direction cosine and spacing tolerance added by @sarthakpati in #1365
- addressing #1366 by @sarthakpati in #1367
- Perfusion Alignment fixes by @sarthakpati in #1363
- Plotting for perfusion alignment by @ashishsingh18 in #1370
- TrainingModule parameter changes by @AlexanderGetka-cbica in #1371
- 1369 by @sarthakpati in #1372
- added discussion section by @sarthakpati in #1381
- 1391 by @sarthakpati in #1392
- Perfusion PCA updates by @ashishsingh18 in #1389
- add codacy badge by @ashishsingh18 in #1404
- Fix #1405 by @AlexanderGetka-cbica in #1406
- Version updated and a minor FE fix by @sarthakpati in #1394
- Some dicom-related fixes by @sarthakpati in #1409
- added 1% tolerance for feature extraction by @sarthakpati in #1414
- Testing CS's PR from my fork by @sarthakpati in #1419
- Update Utilities.cxx by @chiharusako in #1418
- Try pointing NITRC upload to new location by @AlexanderGetka-cbica in #1420
- Updating links by @sarthakpati in #1426
- removing tests to ensure azure finishes builds by @sarthakpati in #1425
- Update Dockerfile to correct entrypoint by @AlexanderGetka-cbica in #1428
- Documentation updated by @sarthakpati in #1429
- DICOM read fix by @sarthakpati in #1431
- Traning module revamp and several bugfixes by @AlexanderGetka-cbica in #1442
- Documentation updates by @sarthakpati in #1445
- Minor html updates by @sarthakpati in #1448
- Perfusion Alignment, PCA and Derivatives measures by @AlexanderGetka-cbica in #1463
- Diffusion derivatives additions by @AlexanderGetka-cbica in #1454
- perfusion pca documentation update by @ashishsingh18 in #1462
- Version update for alpha_2 by @sarthakpati in #1461
- Update version to 1.9.0.Alpha by @AlexanderGetka-cbica in #1464
- added parse() to handle options advertised by makeself, added more te… by @MarkBergman-cbica in #1480
- Adding baseline IBSI2 feature extraction by @sarthakpati in #1469
- Perfusion-related fixes (PHI, PerfusionPCA, GUI/CLI) by @AlexanderGetka-cbica in #1476
- Fix diffusion derivatives by @AlexanderGetka-cbica in #1478
- COLLAGE feature additions/warnings (also a DeepMedic model version fix) by @AlexanderGetka-cbica in #1479
- More miscellaneous fixes for 1.9 by @AlexanderGetka-cbica in #1482
- 1.9.0.beta version change by @AlexanderGetka-cbica in #1485
New Contributors
- @MarkBergman-cbica made their first contribution in #1480
Full Changelog: 1.8.1...1.9.0.RC
Contributors
sarthakpati, MarkBergman-cbica, and 3 other contributors
Assets 2
1.9.0.Beta
This is the beta release of CaPTk version 1.9.0, containing many bug fixes and a few new features.
Available binaries (download at NITRC):
| Platform (x64) | Link |
|---|---|
| Windows | https://www.nitrc.org/frs/downloadlink.php/12517 |
| Linux | https://www.nitrc.org/frs/downloadlink.php/12518 |
Note that macOS is now supported via Docker image and is not currently built as a standalone binary. Please pull the cbica/captk image from Docker Hub for use on Mac.
What's Changed
- updated version by @sarthakpati in #1353
- Version updated for models by @sarthakpati in #1356
- Version updated for next release by @sarthakpati in #1358
- 1359 by @sarthakpati in #1360
- Feature Extraction updates by @sarthakpati in #1362
- Direction cosine and spacing tolerance added by @sarthakpati in #1365
- addressing #1366 by @sarthakpati in #1367
- Perfusion Alignment fixes by @sarthakpati in #1363
- Plotting for perfusion alignment by @ashishsingh18 in #1370
- TrainingModule parameter changes by @AlexanderGetka-cbica in #1371
- 1369 by @sarthakpati in #1372
- added discussion section by @sarthakpati in #1381
- 1391 by @sarthakpati in #1392
- Perfusion PCA updates by @ashishsingh18 in #1389
- add codacy badge by @ashishsingh18 in #1404
- Fix #1405 by @AlexanderGetka-cbica in #1406
- Version updated and a minor FE fix by @sarthakpati in #1394
- Some dicom-related fixes by @sarthakpati in #1409
- added 1% tolerance for feature extraction by @sarthakpati in #1414
- Testing CS's PR from my fork by @sarthakpati in #1419
- Update Utilities.cxx by @chiharusako in #1418
- Try pointing NITRC upload to new location by @AlexanderGetka-cbica in #1420
- Updating links by @sarthakpati in #1426
- removing tests to ensure azure finishes builds by @sarthakpati in #1425
- Update Dockerfile to correct entrypoint by @AlexanderGetka-cbica in #1428
- Documentation updated by @sarthakpati in #1429
- DICOM read fix by @sarthakpati in #1431
- Traning module revamp and several bugfixes by @AlexanderGetka-cbica in #1442
- Documentation updates by @sarthakpati in #1445
- Minor html updates by @sarthakpati in #1448
- Perfusion Alignment, PCA and Derivatives measures by @AlexanderGetka-cbica in #1463
- Diffusion derivatives additions by @AlexanderGetka-cbica in #1454
- perfusion pca documentation update by @ashishsingh18 in #1462
- Version update for alpha_2 by @sarthakpati in #1461
- Update version to 1.9.0.Alpha by @AlexanderGetka-cbica in #1464
- added parse() to handle options advertised by makeself, added more te… by @MarkBergman-cbica in #1480
- Adding baseline IBSI2 feature extraction by @sarthakpati in #1469
- Perfusion-related fixes (PHI, PerfusionPCA, GUI/CLI) by @AlexanderGetka-cbica in #1476
- Fix diffusion derivatives by @AlexanderGetka-cbica in #1478
- COLLAGE feature additions/warnings (also a DeepMedic model version fix) by @AlexanderGetka-cbica in #1479
- More miscellaneous fixes for 1.9 by @AlexanderGetka-cbica in #1482
- 1.9.0.beta version change by @AlexanderGetka-cbica in #1485
New Contributors
- @MarkBergman-cbica made their first contribution in #1480
Full Changelog: 1.8.1...1.9.0.Beta
Contributors
sarthakpati, MarkBergman-cbica, and 3 other contributors
Assets 2
1.9.0.Alpha
This is an alpha release of CaPTk 1.9.0 containing several bugfixes, new features and enhancements.
Available binaries (download at NITRC):
| Platform (x64) | Link |
|---|---|
| Windows | https://www.nitrc.org/frs/downloadlink.php/12430 |
| Linux | https://www.nitrc.org/frs/downloadlink.php/12431 |
| macOS | https://www.nitrc.org/frs/downloadlink.php/12432 |
What's Changed
- updated version by @sarthakpati in #1353
- Version updated for models by @sarthakpati in #1356
- Version updated for next release by @sarthakpati in #1358
- 1359 by @sarthakpati in #1360
- Feature Extraction updates by @sarthakpati in #1362
- Direction cosine and spacing tolerance added by @sarthakpati in #1365
- addressing #1366 by @sarthakpati in #1367
- Perfusion Alignment fixes by @sarthakpati in #1363
- Plotting for perfusion alignment by @ashishsingh18 in #1370
- TrainingModule parameter changes by @AlexanderGetka-cbica in #1371
- 1369 by @sarthakpati in #1372
- added discussion section by @sarthakpati in #1381
- 1391 by @sarthakpati in #1392
- Perfusion PCA updates by @ashishsingh18 in #1389
- add codacy badge by @ashishsingh18 in #1404
- Fix #1405 by @AlexanderGetka-cbica in #1406
- Version updated and a minor FE fix by @sarthakpati in #1394
- Some dicom-related fixes by @sarthakpati in #1409
- added 1% tolerance for feature extraction by @sarthakpati in #1414
- Testing CS's PR from my fork by @sarthakpati in #1419
- Update Utilities.cxx by @chiharusako in #1418
- Try pointing NITRC upload to new location by @AlexanderGetka-cbica in #1420
- Updating links by @sarthakpati in #1426
- removing tests to ensure azure finishes builds by @sarthakpati in #1425
- Update Dockerfile to correct entrypoint by @AlexanderGetka-cbica in #1428
- Documentation updated by @sarthakpati in #1429
- DICOM read fix by @sarthakpati in #1431
- Traning module revamp and several bugfixes by @AlexanderGetka-cbica in #1442
- Documentation updates by @sarthakpati in #1445
- Minor html updates by @sarthakpati in #1448
- Perfusion Alignment, PCA and Derivatives measures by @AlexanderGetka-cbica in #1463
- Diffusion derivatives additions by @AlexanderGetka-cbica in #1454
- perfusion pca documentation update by @ashishsingh18 in #1462
- Version update for alpha_2 by @sarthakpati in #1461
- Update version to 1.9.0.Alpha by @AlexanderGetka-cbica in #1464
Full Changelog: 1.8.1...1.9.0.Alpha
Contributors
sarthakpati, ashishsingh18, and 2 other contributors
Assets 2
Alpha Release for showcase at RSNA 2021
Bug fixes for a new version.
Available binaries (download at NITRC):
| Platform (x64) | Link |
|---|---|
| Windows | https://www.nitrc.org/frs/downloadlink.php/12376 |
| Linux | https://www.nitrc.org/frs/downloadlink.php/12374 |
| macOS | https://www.nitrc.org/frs/downloadlink.php/12375 |
What's Changed
- updated version by @sarthakpati in #1353
- Version updated for models by @sarthakpati in #1356
- Version updated for next release by @sarthakpati in #1358
- 1359 by @sarthakpati in #1360
- Feature Extraction updates by @sarthakpati in #1362
- Direction cosine and spacing tolerance added by @sarthakpati in #1365
- addressing #1366 by @sarthakpati in #1367
- Perfusion Alignment fixes by @sarthakpati in #1363
- Plotting for perfusion alignment by @ashishsingh18 in #1370
- TrainingModule parameter changes by @AlexanderGetka-cbica in #1371
- 1369 by @sarthakpati in #1372
- added discussion section by @sarthakpati in #1381
- 1391 by @sarthakpati in #1392
- Perfusion PCA updates by @ashishsingh18 in #1389
- add codacy badge by @ashishsingh18 in #1404
- Fix #1405 by @AlexanderGetka-cbica in #1406
- Version updated and a minor FE fix by @sarthakpati in #1394
- Some dicom-related fixes by @sarthakpati in #1409
- added 1% tolerance for feature extraction by @sarthakpati in #1414
- Testing CS's PR from my fork by @sarthakpati in #1419
- Update Utilities.cxx by @chiharusako in #1418
- Try pointing NITRC upload to new location by @AlexanderGetka-cbica in #1420
- Updating links by @sarthakpati in #1426
- removing tests to ensure azure finishes builds by @sarthakpati in #1425
- Update Dockerfile to correct entrypoint by @AlexanderGetka-cbica in #1428
- Documentation updated by @sarthakpati in #1429
- DICOM read fix by @sarthakpati in #1431
- Traning module revamp and several bugfixes by @AlexanderGetka-cbica in #1442
- Documentation updates by @sarthakpati in #1445
Full Changelog: 1.8.1...1.8.2.Alpha
Release for showcase at MICCAI 2020
Highlights the applications used in the Brain Tumor Segmentation (BraTS) challenge.
Available binaries (download at NITRC):
| Platform (x64) | Link |
|---|---|
| Windows | https://www.nitrc.org/frs/downloadlink.php/11777 |
| Linux | https://www.nitrc.org/frs/downloadlink.php/11778 |
| Linux (CentOS7) | https://www.nitrc.org/frs/downloadlink.php/11779 |
| macOS | https://www.nitrc.org/frs/downloadlink.php/11780 |
Release for showcase at MICCAI 2020 with Molecular Subtype
Highlights the applications used in the Brain Tumor Segmentation (BraTS) challenge. Please use version 1.8.1 for updated binaries.
Testing version - Beta
Available binaries (download at NITRC):
| Platform (x64) | Link |
|---|---|
| Windows | https://www.nitrc.org/frs/downloadlink.php/11777 |
| Linux | https://www.nitrc.org/frs/downloadlink.php/11778 |
| Linux (CentOS7) | https://www.nitrc.org/frs/downloadlink.php/11779 |
| macOS | https://www.nitrc.org/frs/downloadlink.php/11780 |
Testing version [3]
Available binaries (download at NITRC):
| Platform (x64) | Link |
|---|---|
| Windows | https://www.nitrc.org/frs/downloadlink.php/11777 |
| Linux | https://www.nitrc.org/frs/downloadlink.php/11778 |
| Linux (CentOS7) | https://www.nitrc.org/frs/downloadlink.php/11779 |
| macOS | https://www.nitrc.org/frs/downloadlink.php/11780 |
Testing version [2]
Available binaries (download at NITRC):
| Platform (x64) | Link |
|---|---|
| Windows | https://www.nitrc.org/frs/downloadlink.php/11777 |
| Linux | https://www.nitrc.org/frs/downloadlink.php/11778 |
| Linux (CentOS7) | https://www.nitrc.org/frs/downloadlink.php/11779 |
| macOS | https://www.nitrc.org/frs/downloadlink.php/11780 |