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A short script for searching in Uniprot using RESTful APIs

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Amirreza-Mousavi/R_Meets_Uniprot

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R_Meets_Uniprot

A short script for searching in Uniprot using RESTful APIs of the European Bioinformatics Institute (EBI).

Make sure to have the Biostrings package installed.

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Biostrings")

For the future, I might try to improve the functionality of the searchEBI function, by accepting extra options, filters and other criteria to generate the final URLs. Filter by Reviewed/Unreviewed, Entry name, length, orgranism, etc must be added in the future. I might code a similar program to retrieve pdb files from Protein Data Bank (PDB).


As always, I have put the Expected_Results folder which contains the files that the R script generates once you run it.

NOTE: Make sure to edit setwd command in the R script to point at your desired directory.