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"Caught stoi/stod/stof error" in breakpoints file #123

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catalinamed opened this issue Jun 23, 2023 · 0 comments
Open

"Caught stoi/stod/stof error" in breakpoints file #123

catalinamed opened this issue Jun 23, 2023 · 0 comments

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@catalinamed
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Hi! We were trying to run an analysis and we've been having issues with SvABA, and it keeps giving us the same error:
...vcf - reading in the breakpoints file
caught stoi/stod/stof error on: -1 for count 10
chr2 33141554 + chr3 10076358 - g t -1 -1 60 -1 -1 -1 60 00 5 107 0 0 x x chr2:33141554(+)-chr3:10076358(-)__4_10070339_10084349D 0 LOWMAPQDISC DSCRD 0 0 1 0 8.00499 0 x 0 x x x 0/0:5:107:12:0,12,280.5:0:5:12.24:8.005

We tried targeted analysis with diferent bed regions and bam files and it keeps giving us the same issue. We have checked that the chromosome names are the same throughout all our input files. The error always states : " for count 10".
Could you provide us with more information about this issue and how can we solve it?

Thank you so much for you time.

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