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Questions about *alignments.txt.gz #105

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yifnzhao opened this issue Aug 17, 2021 · 0 comments

yifnzhao commented Aug 17, 2021

Hello,

I have two questions about *alignments.txt.gz:

As an example, I wonder how the following text should be interpreted. Does it mean there is a breakpoint between 1:1,363,501 and
1:30,180,408, or a pair of breakpoints flanking this region?

Global BP: : 1:1,363,501(-) to 1:30,180,408(+) SPAN 28816907 c_1_1347501_1372501_19C t000:13 ins_against_contig 0 del_against_contig 0 c_1_1347501_1372501_19C

What is the difference between Global BP and SECONDARY Global BP?

Thanks!

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