Version 0.7.0

Merge pull request #86 from hammerlab/remove-soft-clipped-bases

By default, removing soft-clipped bases.

Version 0.5.1

Variant sequences assembled from reads with overlapping sequence content. Matching variant sequences to reference transcripts (to determine reading frame) will iteratively trim the sequence by coverage (to get around low coverage sequence regions with errors).

Version 0.1.0

v0.1.0

added some default strings to args

Version 0.0.3

Fixed a few major bugs, still not ready for general usage but getting closer.

Version 0.0.2

Rewrote the previous prototype to be significantly more structured, robust, and testable. Caught several bugs and missing features in the process.

Version 0.01: Early release

Created for Zenodo DOI