Pinned

1. pyensembl pyensembl Public

   Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

   Python 354 67

2. varcode varcode Public

   Library for manipulating genomic variants and predicting their effects

   Python 81 27

3. mhcflurry mhcflurry Public

   Peptide-MHC I binding affinity prediction

   Python 180 55

4. vaxrank vaxrank Public

   Ranked vaccine peptides for personalized cancer immunotherapy

   Python 53 21

5. mhctools mhctools Public

   Python interface to running command-line and web-based MHC binding predictors

   Python 84 19

6. neoantigen-vaccine-pipeline neoantigen-vaccine-pipeline Public

   Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

   Jupyter Notebook 73 24