Python wrapper and web-server for Ensembl VEP
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Updated
Apr 20, 2017 - Python
Python wrapper and web-server for Ensembl VEP
Scripts for single cell variant calling
Variant calling format (vcf) file genomics pipeline for HPC and cloud
example genomics workflow for student training
find large indels (in the blind spot between GATK/freebayes and SV callers)
A Custom Variant Calling Pipeline for Dengue WGS (BWA + GATK + Lofreq) using nextflow and docker
A Node.js library for reading and filtering variant call data using streams
GATK4 Best Practice Nextflow Pipeline
Stellenbosch University Variant Calling Pipeline
Thesaurus for genetic variants
SNP and variant calling pipeline for bacteria
A collection of data sets for benchmarking de novo variant discovery tools
A collection of data sets for benchmarking de novo variant discovery tools
A python script for generating sample VCF data based on a template VCF
This repository contains bash shell scripts
A pipeline to study intratumor heterogeneity (ITH) with Canopy
A pipeline to call variants for RNASeq implemented with python.
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