Variant Calling Pipeline for Dengue WGS
This pipelines is written in Nextflow for generating consensus fasta file for dengue virus WGS.
Software used in the pipeline:
- BWA
- Samtools
- BCFtools
- GATK 3.8
- Lofreq 2.1.3
- multiqc 1.2
thanhleviet/dengue-wgs
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A Custom Variant Calling Pipeline for Dengue WGS (BWA + GATK + Lofreq) using nextflow and docker
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