Name		Name	Last commit message	Last commit date
Latest commit History 28 Commits
chain		chain
README.md		README.md
add_prefix_chr_to_chromosome_names		add_prefix_chr_to_chromosome_names
clean_affy_exome_chip		clean_affy_exome_chip
clean_gencode_annotation		clean_gencode_annotation
clean_illumina_platinum		clean_illumina_platinum
clean_lobstr_trf_bed		clean_lobstr_trf_bed
clean_mills_1000g_gatk		clean_mills_1000g_gatk
clean_mills_chip		clean_mills_chip
clean_nist_giab_v2.19		clean_nist_giab_v2.19
clean_omni_chip		clean_omni_chip
convert_hg19chain_to_hs37d5chain		convert_hg19chain_to_hs37d5chain
convert_lobstr_trf_bed_to_vcf		convert_lobstr_trf_bed_to_vcf
convert_repeatseq_resource_2_vcf		convert_repeatseq_resource_2_vcf
convert_ucsc_rmsk_bed_to_vcf		convert_ucsc_rmsk_bed_to_vcf
convert_vcf_2_bed		convert_vcf_2_bed
convert_vntrseek_resource_2_vcf		convert_vntrseek_resource_2_vcf
create_grch37_nonpseudoautosomal_regions_bed		create_grch37_nonpseudoautosomal_regions_bed
create_grch37_pseudoautosomal_regions_bed		create_grch37_pseudoautosomal_regions_bed
create_grch38_nonpseudoautosomal_regions_bed		create_grch38_nonpseudoautosomal_regions_bed
create_grch38_pseudoautosomal_regions_bed		create_grch38_pseudoautosomal_regions_bed
generate_vt_bundle_grch37_makefile.pl		generate_vt_bundle_grch37_makefile.pl
generate_vt_bundle_grch38_makefile.pl		generate_vt_bundle_grch38_makefile.pl

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vt-bundle

Scripts for generating vt resource bundle

http://genome.sph.umich.edu/wiki/Vt#Resource_Bundle

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Scripts for generating vt resource bundle

variant-calling reference-data

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