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Efficiently detecting genomic structural variants (SVs) is a key step to grasp the "missing heritability" underlying complex traits involved in major evolutionary processes such as speciation, phenotypic plasticity, and adaptive responses. We present a random forest ensemble method for accurate deletion identification. We called this approach RF…
Source code to support the paper: "Extensive mitochondrial population structure and haplotype-specific variation in metabolic phenotypes in the Drosophila Genetic Reference Panel"
Python code to detect ECGR Mutations; Takes a reference genome and bunch of reads as input and finds mutations (1-3 bp length) where number of supporting reads greater than 5
A chamada de variantes envolve a identificação de polimorfismos de nucleotídeo único (SNPs) e pequenas inserções e deleções (indels) em dados de Sequenciamento de Nova Geração (NGS). Nesta pipeline descrevo a detecção de SNP para identificação de possíveis alterações de aminoácidos em proteínas virais.