snippy-variants

Perform read mapping and variant calling using snippy.

Usage

nextflow run BCCDC-PHL/snippy-variants \
  --ref </path/to/ref.fa> \
  --fastq_input </path/to/fastqs> \
  --outdir </path/to/output_dir>

Name		Name	Last commit message	Last commit date
Latest commit History 10 Commits
bin		bin
environments		environments
modules		modules
.gitignore		.gitignore
README.md		README.md
main.nf		main.nf
nextflow.config		nextflow.config