transcription-factor-binding-site
Here are 13 public repositories matching this topic...
Prediction of the binding sites of multiple transcription factors in a whole genome
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Apr 29, 2019 - Python
TFregulomeR reveals transcription factors’ context-specific features and functions
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Apr 16, 2024 - R
DNA Motif discovery that includes the discovery of flexible (long or gapped) motifs.
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Jan 18, 2024 - Julia
Find two-boxes transcription factor binding sites (made for sigma factor binding sites) by comparing intergenic DNA regions upstream pairs of orthologous genes using statistical analyses
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Oct 6, 2020 - Perl
Which ESR1 and PGR binding sites are functional?
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Dec 11, 2018 - Python
Deep Unfolded Convolutional Dictionary Learning for motif discovery.
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Feb 2, 2023 - Julia
Automated analysis tool for mutations in promoters, transcription factor binding sites, coding regions and protein domains in the context of gene regulatory networks.
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Sep 7, 2021 - Python
In Press, GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases
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May 20, 2024 - Python
TFregulomeR reveals transcription factors’ context-specific features and functions
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Updated
Apr 17, 2022 - R
TFregulomeR reveals transcription factors’ context-specific features and functions
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Updated
Apr 18, 2022 - R
Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or transcription factor responsive elements with manual sequence (IUPAC) or JASPAR API.
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May 23, 2024 - Python
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
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Apr 30, 2024 - Shell
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