Skip to content

In Press, GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases

License

bioinfodlsu/rice-pilaf

Repository files navigation

RicePilaf

badge badge badge badge badge badge badge
Code style: black Create and publish Docker image badge

Welcome! RicePilaf is short for Rice Post-GWAS/QTL Analysis dashboard. Ok, so we are not great at acronyms; but like a flavorful rice pilaf that combines many ingredients, this RicePilaf combines information from multiple rice databases to provide insights into your QTL/GWAS loci.

RicePilaf-DemoVideo.mp4

Installation and usage

For installation and usage, please visit the wiki.

It is advised to install the app locally.

Alternatively, you can try RicePilaf at one of the sites below.

Publicly accessible running instances of RicePilaf

URL Site Version Status (Date)
https://ricepilaf.bioinfodlsu.com/ Digital Ocean (Singapore) 1.0.1 Running (May 20, 2024)
https://ricepilaf.irri.org/
https://rice-pilaf.irri.org/
Philippine Government Department of Science and Technology – Advanced Science and Technology Institute (DOST-ASTI) COARE – Science Cloud resource 0.1.3 Running (March 15, 2024)

Contact

If you have issues, concerns, suggestions, or questions, please contact Anish Shrestha (anish.shrestha --atmark-- dlsu.edu.ph).