Matlab code for Bayesian Network Component Analysis
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Updated
Nov 11, 2015 - MATLAB
Matlab code for Bayesian Network Component Analysis
Imoto, H. & Okada, M. Signal-dependent regulation of early-response genes and cell cycle: a quantitative view. Curr. Opin. Syst. Biol. 15, 100–108 (2019).
Python implementation for René Thomas's Framework
The (rendered) website of the Resendis lab. Do not send PRs here! Use https://github.com/resendislab/website instead!
Multi-dimensional, trans-omics metabolic maps.
The Matlab tool for Prediction Uncertainty Analysis (PUA) integrates Profile Likelihood analysis with Bayesian sampling.
Collection of scripts for enhancing humanGEM based models with kinetic and proteomics constraints and specialized simulation utilities.
A Bio2BEL package for converting the Gene Ontology (GO) to BEL
Determination of product-growth-coupled strain designs employing stoichiometric metabolic models.
Utilities for working with SLV and DAT files.
Ontology for whole-cell modeling
Supplementary Material for Multistate Control Paper
API for BioArInEO project
Ontology of algorithms for analyzing biological models, their parameters, and their outputs
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Simulator for SBML Models
A collection of detailed notes and random thoughts.
Genome-Scale Metabolic Model of CD8+ T-Cells
PhD thesis: Molecular feedback and self-organisation in the PAR polarity network
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