Course hometasks & additional links/materials on "Programming foundations for chemistry problems solving" - ITMO University, 2017 (some materials might be in Russian)
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Updated
Dec 25, 2017 - HTML
Course hometasks & additional links/materials on "Programming foundations for chemistry problems solving" - ITMO University, 2017 (some materials might be in Russian)
(M2-Project) Construction a data set of protein structures gathering structures filtered
Phyton codes for Structural Bioinformatics Questions
RIVEM software plugin for UCSF Chimera
Structural Interactome pipeline
Final reports for structural bioinformatics classes with PyMOL
local PDB manager
PointNet for Deep Rank: protein-protein interaction scoring using neural networks
3D distance from N-glycosylation sites to other residues, for all published glycoproteins. Evidence for the UGGT constraint we propose as the Parodi Limit. https://www.cell.com/structure/fulltext/S0969-2126(20)30464-0 https://en.wikipedia.org/wiki/UGGT
A small demo package for automated structural superimposition
Benchmarking common tasks on proteins in various languages and packages
Command-line interface for ZEAL
Cours BioInformatique Structurale II : analyse via Python
Projet Final cours BioInformatique Structurale II
The code from the paper "An automated protocol for modelling peptide substrates to proteases"
Fiscore package development, updates, and the newest version release
Convert between PDB and CIF formats
Calculation of interatomic interactions in molecular structures
A bunch of Rust snippet to play with data in PDB (https://www.rcsb.org/).
collect statistics from the entire PDB library
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